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[182573_at]

Description T05B4.3 /REP_DB=WormBase Gene ID /WP=CE13197 /TR=O16424 /GB=AAC69054.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      6grp_highest_nonorm > 31      6grp_total > 11      4grp_total > 49      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4282
1 2 3 4 range
A 92.8
(-3)
P 		4167.3
(3)
P 		3820.9
(2.5)
P 		81.1
(-3)
A 		4086
B 118.6
(-2.9)
P 		3902.2
(2.4)
P 		4340.4
(3)
P 		58.6
(-3)
A 		4282
C 136.9
(-2.9)
P 		3972.8
(3)
P 		3617.4
(2.5)
P 		63.5
(-3)
A 		3909
avr 116.1
(-2.9) 		4014.1
(3) 		3926.2
(2.9) 		67.7
(-3) 		3946

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1269
1 2 3 4 5 6 range
A 780.4
(-1.7)
P 		1779.1
(3)
P 		1117.1
(-0.1)
P 		622.3
(-2.5)
P 		509.9
(-3)
P 		731.9
(-2)
P 		1269
B 799
(-1.7)
P 		1621.9
(3)
P 		1342.4
(1.4)
P 		714
(-2.2)
P 		585.5
(-3)
P 		578.7
(-3)
P 		1043
C 1030.4
(0)
P 		1502.7
(3)
P 		1233
(1.3)
P 		554.3
(-3)
P 		967.8
(-0.4)
P 		599.4
(-2.7)
P 		948
avr 869.9
(-1.6) 		1634.6
(3) 		1230.8
(0.6) 		630.2
(-3) 		687.7
(-2.7) 		636.7
(-3) 		1004
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1250
1 2 3 4 range
A 33.8
(-2.9)
P 		904.6
(2.4)
P 		998.9
(3)
P 		11.9
(-3)
A 		987
B 37.8
(-2.8)
P 		963.8
(2.7)
P 		1005.8
(3)
P 		12.5
(-3)
A 		993
C 45.3
(-2.8)
P 		1142.2
(2.4)
P 		1260.8
(3)
P 		10.7
(-3)
A 		1250
avr 39
(-2.8) 		1003.5
(2.5) 		1088.5
(3) 		11.7
(-3) 		1077

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 521
1 2 3 4 5 6 range
A 143.9
(-3)
P 		632.7
(3)
P 		243.3
(-1.8)
P 		157.8
(-2.8)
P 		153.9
(-2.9)
P 		178.2
(-2.6)
P 		489
B 278
(-1.5)
P 		539.9
(3)
P 		326
(-0.7)
P 		189.1
(-3)
P 		237.9
(-2.2)
P 		215.8
(-2.5)
P 		351
C 381.9
(1.7)
P 		458.5
(3)
P 		313.8
(0.5)
P 		111.5
(-3)
P 		313.2
(0.5)
P 		200.7
(-1.5)
P 		347
avr 267.9
(-1.2) 		543.7
(3) 		294.4
(-0.8) 		152.8
(-3) 		235
(-1.7) 		198.2
(-2.3) 		391
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182573_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15748
Sequence Type Exemplar sequence
Representative Public ID T05B4.3 NCBI
Target Description T05B4.3 /REP_DB=WormBase Gene ID /WP=CE13197 /TR=O16424 /GB=AAC69054.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071751(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071751 NCBI Caenorhabditis elegans T05B4.3 (T05B4.3) mRNA, complete cds. 11/11 None
SNAP00000031068 ENSEMBL cdna:SNAP chromosome:CEL140:V:4129751:4130610:1 11/11 None
GENEFINDER00000031075 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4129751:4130610:1 11/11 None
T05B4.3 ENSEMBL cdna:known chromosome:CEL140:V:4129719:4130722:1 gene:T05B4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4129750-4130610(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05B4.3
Entrez Gene 178812 Entrez gene
SwissProt O16424 EMBL-EBI
WormBase CE13197 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69054 Hypothetical protein T05B4.3 [Caenorhabditis elegans] ref|NP_504152.1| T05B4.3 [Caenorhabditis elegans] 1.0E-121
blast AAC69052 Hypothetical protein T05B4.12 [Caenorhabditis elegans] ref|NP_504149.1| T05B4.12 [Caenorhabditis elegans] 1.0E-100
blast CAE65454 Hypothetical protein CBG10419 [Caenorhabditis briggsae] 9.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 0.65
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.0E-10
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 6.7E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.2E-11
Sequence
Target Sequence 
>C. ELEGANS:182573_AT
gctcgaactcgatttccgattcatcgtgtgctgctctctacccaccagcagatgcggcta
ttggatacccagctgctggaaatgatgctgaaagaccatttgcttgttacacaactgcca
ctccaactcctgctccagttgttgctgacatgaagactgctgccttggccaactgcgcca
agacctgtggattctgctgctcaactgacgcctacaattgtccaaatgttgctttcccac
gtctcaactgcaacacaatcaccaaggctcaatgcgactctgtcacttggagaaccatca
tcgccgctgactgcccatctgcctgcggattctgcaaccagggaggatgcgtcgatgctg
tcaccaactgcggaaacgacttgagcatttgccaaaccgtcggaatgcaagatttcgtta
accaatactgccaaagaacctgcggaagatgcccatcgacaactggatccggaactgtca
ccactgcatcttcgggatcttgcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCGAACTCGATTTCCGATTCATC 334 299 131 Antisense
ACCCACCAGCAGATGCGGCTATTGG 39 91 170 Antisense
ATGCGGCTATTGGATACCCAGCTGC 467 39 182 Antisense
CCAACTGCGCCAAGACCTGTGGATT 494 275 299 Antisense
GCTCAACTGACGCCTACAATTGTCC 669 301 329 Antisense
ATCACCAAGGCTCAATGCGACTCTG 102 27 388 Antisense
TGCGACTCTGTCACTTGGAGAACCA 377 583 403 Antisense
CAACCAGGGAGGATGCGTCGATGCT 197 187 465 Antisense
GACTTGAGCATTTGCCAAACCGTCG 345 371 508 Antisense
CAACTGGATCCGGAACTGTCACCAC 481 187 590 Antisense
CACTGCATCTTCGGGATCTTGCACT 34 199 612 Antisense
Sequence Source Affymetrix Proprietary Database