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[182572_s_at]

Description F52G3.1 /REP_DB=WormBase Gene ID /WP=CE28439 /TR=Q9GZI0 /GB=AAF99974.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 40      6grp_total > 06      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 775
(3)
P 		571.7
(-1.1)
P 		481
(-3)
P 		546.1
(-1.7)
P 		294
B 778.3
(3)
P 		543.1
(-2.4)
P 		515.8
(-3)
P 		565.5
(-1.9)
P 		263
C 780.1
(3)
P 		610.3
(-0.3)
P 		469.3
(-3)
P 		518.2
(-2.1)
P 		311
avr 777.8
(3) 		575
(-1.2) 		488.7
(-3) 		543.3
(-1.9) 		289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 754
1 2 3 4 5 6 range
A 877.2
(3)
P 		770.4
(1.7)
P 		366
(-3)
P 		478.4
(-1.7)
P 		543.9
(-0.9)
P 		480.4
(-1.7)
P 		511
B 884.6
(3)
P 		691.2
(0.8)
P 		443.8
(-2.1)
P 		512.3
(-1.3)
P 		424.3
(-2.3)
P 		366.1
(-3)
P 		519
C 1067
(3)
P 		646.6
(-0.3)
P 		565.9
(-1)
P 		430.8
(-2.1)
P 		560.6
(-1)
P 		313.1
(-3)
P 		754
avr 942.9
(3) 		702.7
(0.4) 		458.6
(-2.2) 		473.8
(-2.1) 		509.6
(-1.7) 		386.5
(-3) 		556
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 282.2
(3)
P 		124.1
(-1.7)
P 		125.7
(-1.6)
P 		79.9
(-3)
P 		202
B 248.2
(3)
P 		134.1
(-2.3)
P 		119.5
(-3)
P 		120.5
(-3)
P 		129
C 258.2
(3)
P 		175.5
(0.1)
P 		163.6
(-0.3)
P 		87.4
(-3)
P 		171
avr 262.9
(3) 		144.6
(-1.3) 		136.3
(-1.5) 		95.9
(-3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 161.7
(-0.5)
P 		274
(3)
P 		79.7
(-3)
P 		121.3
(-1.7)
P 		164.1
(-0.4)
P 		117
(-1.8)
P 		194
B 307.8
(3)
P 		230.1
(0.7)
P 		107.8
(-3)
P 		135.7
(-2.2)
P 		172.4
(-1.1)
P 		136.5
(-2.1)
P 		200
C 395.5
(3)
P 		197.3
(-0.8)
P 		144
(-1.9)
P 		86.6
(-3)
P 		181.4
(-1.2)
P 		104.8
(-2.6)
P 		309
avr 288.3
(3) 		233.8
(1.2) 		110.5
(-3) 		114.5
(-2.9) 		172.6
(-0.9) 		119.4
(-2.7) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182572_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17814
Sequence Type Exemplar sequence
Representative Public ID F52G3.1 NCBI
Target Description F52G3.1 /REP_DB=WormBase Gene ID /WP=CE28439 /TR=Q9GZI0 /GB=AAF99974.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078343 NCBI Caenorhabditis elegans F52G3.1 (F52G3.1) mRNA, complete cds. 11/11 None
SNAP00000042481 ENSEMBL cdna:SNAP chromosome:CEL140:X:16967137:16972381:1 11/11 None
GENEFINDER00000042485 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16969853:16972381:1 11/11 None
F52G3.1 ENSEMBL cdna:known chromosome:CEL140:X:16963782:16972721:1 gene:F52G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16963892-16972381(+) 99.16 100.0
Public Domain and Genome References
Gene Title
Ensembl F52G3.1
Entrez Gene 181741 Entrez gene
SwissProt Q9GZI0 EMBL-EBI
WormBase CE28439 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99974 Hypothetical protein F52G3.1 [Caenorhabditis elegans] ref|NP_510744.1| F52G3.1 [Caenorhabditis elegans] 0.0
blast T32466 hypothetical protein F52G3.1 - Caenorhabditis elegans 0.0
blast CAE69701 Hypothetical protein CBG15962 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009738 EMBL-EBI BAT2, N-terminal 5.1E-106
Sequence
Target Sequence 
>C. ELEGANS:182572_S_AT
caatgagcaccgagctccgtttggcgggcttccaaacggaatgttaaatggtatgggtaa
cggtcaagcgccttatttcgaccgtaccacattgccaccggcaaacttggctgttggaag
tcaacgacagtttagtggcaacatgaatcgtcaacaacaacaacaacaacaacaacaaca
atcatcgggacagtcgcacccgatgaatgggatgggcaactcaaatggaggaccacaatt
cccacaacaaaacttcacgcaaccaccgccaccagtgatgaggtttccgccttcaaacgg
aacatctcaccaagacaacggtccattcttcttcaacaacggtaaccgtgcaccaattgg
cagaccgccaggtctctcggcggccgggcactctgcacaactggatatgatttggtcgaa
ctccaacaacagctactttggtaatgcgggtcattccaatagcagctggaatggcggagc
tggagctggcgctggaggagtcggcggtgtacaggcggctggtccgctgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGAGCACCGAGCTCCGTTTGGC 168 183 2982 Antisense
TATGGGTAACGGTCAAGCGCCTTAT 332 653 3033 Antisense
TTATTTCGACCGTACCACATTGCCA 389 677 3054 Antisense
ATTGCCACCGGCAAACTTGGCTGTT 633 5 3072 Antisense
CAACAATCATCGGGACAGTCGCACC 7 191 3157 Antisense
TTCCCACAACAAAACTTCACGCAAC 642 695 3220 Antisense
CGCCACCAGTGATGAGGTTTCCGCC 584 255 3248 Antisense
AAGACAACGGTCCATTCTTCTTCAA 424 153 3293 Antisense
CAACGGTAACCGTGCACCAATTGGC 237 187 3318 Antisense
GGCACTCTGCACAACTGGATATGAT 279 535 3368 Antisense
TGTACAGGCGGCTGGTCCGCTGAGA 69 559 3489 Antisense
Sequence Source Affymetrix Proprietary Database