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[182570_at]

Description W06D11.5 /REP_DB=WormBase Gene ID /WP=CE06556 /TR=Q23199 /GB=CAA93537.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 8.4
(-3)
A 		36.2
(0.5)
A 		32.3
(-0)
A 		56.2
(3)
A 		48
B 22.2
(-1.2)
A 		36.2
(3)
A 		16.2
(-3)
A 		23.9
(-0.7)
A 		20
C 27.8
(0.7)
A 		41
(3)
M 		6.4
(-3)
A 		27.9
(0.7)
A 		35
avr 19.5
(-2.6) 		37.8
(3) 		18.3
(-3) 		36
(2.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 42.1
(3)
A 		26.8
(0.6)
A 		21.3
(-0.2)
A 		21.9
(-0.1)
A 		7.4
(-2.4)
A 		3.2
(-3)
A 		39
B 6.8
(-2.8)
A 		71.8
(3)
A 		48
(0.9)
A 		7.8
(-2.7)
A 		4.1
(-3)
A 		16.5
(-1.9)
A 		68
C 9.7
(-2.1)
A 		6.6
(-2.7)
A 		38.5
(3)
A 		9.8
(-2.1)
A 		10.7
(-1.9)
A 		4.7
(-3)
A 		34
avr 19.5
(-0.5) 		35.1
(2.8) 		35.9
(3) 		13.2
(-1.8) 		7.4
(-3) 		8.1
(-2.9) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.1
(-3)
A 		7.9
(2.4)
A 		8.4
(3)
A 		8.2
(2.8)
A 		5
B 7.1
(0.9)
A 		8.9
(3)
A 		3.8
(-3)
A 		5.1
(-1.5)
A 		5
C 9.2
(1.4)
A 		11.8
(3)
M 		2.2
(-3)
A 		4.7
(-1.4)
A 		10
avr 6.5
(-0.8) 		9.5
(3) 		4.8
(-3) 		6
(-1.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 7.8
(1.8)
A 		9.5
(3)
A 		4.6
(-0.4)
A 		5.6
(0.3)
A 		2.2
(-2)
A 		0.8
(-3)
A 		9
B 2.4
(-2.8)
A 		23.9
(3)
A 		11.7
(-0.3)
A 		2.1
(-2.9)
A 		1.7
(-3)
A 		6.2
(-1.8)
A 		22
C 3.6
(-1.5)
A 		2
(-2.7)
A 		9.8
(3)
A 		2
(-2.7)
A 		3.5
(-1.6)
A 		1.6
(-3)
A 		8
avr 4.6
(-1.6) 		11.8
(3) 		8.7
(1) 		3.2
(-2.5) 		2.5
(-3) 		2.9
(-2.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182570_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16815
Sequence Type Exemplar sequence
Representative Public ID W06D11.5 NCBI
Target Description W06D11.5 /REP_DB=WormBase Gene ID /WP=CE06556 /TR=Q23199 /GB=CAA93537.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077654(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077654 NCBI Caenorhabditis elegans W06D11.5 (W06D11.5) mRNA, complete cds. 11/11 None
SNAP00000035024 ENSEMBL cdna:SNAP chromosome:CEL140:X:12300055:12301203:1 11/11 None
W06D11.5 ENSEMBL cdna:known chromosome:CEL140:X:12300055:12301203:1 gene:W06D11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12300054-12301203(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06D11.5
Entrez Gene 189245 Entrez gene
SwissProt Q23199 EMBL-EBI
WormBase CE06556 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93537 Hypothetical protein W06D11.5 [Caenorhabditis elegans] ref|NP_510055.1| W06D11.5 [Caenorhabditis elegans] 2.0E-71
blast CAB05171 Hypothetical protein F02H6.4 [Caenorhabditis elegans] ref|NP_502728.1| F02H6.4 [Caenorhabditis elegans] 6.0E-30
Sequence
Target Sequence 
>C. ELEGANS:182570_AT
aaaatacgcaacactccgcgatgtagatcgacaaccagttcaaaaagtcatggaggaaat
tcgtaacatgtactgtaaactgatgtcatgtttatcacgacgagaatcttttgtcctaca
ggaagtaaaagatcgacaaatgctcttgaaagttggattaaaaatttgcaatgaatggct
ccaagaaggcaacagcaacagaccaacaccatttcatttgttgaaacctgatcagcagaa
gaagctcctccatgctacaaagatgcttgaattttttatcgggttgacaccatacgattt
cgatgcacaaaagaccggagactcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATACGCAACACTCCGCGATGTA 155 131 81 Antisense
CACTCCGCGATGTAGATCGACAACC 195 199 92 Antisense
ACGACGAGAATCTTTTGTCCTACAG 417 93 177 Antisense
GAATGGCTCCAAGAAGGCAACAGCA 18 333 253 Antisense
AAGGCAACAGCAACAGACCAACACC 249 159 266 Antisense
AACAGACCAACACCATTTCATTTGT 415 135 277 Antisense
GATCAGCAGAAGAAGCTCCTCCATG 417 421 310 Antisense
GCTCCTCCATGCTACAAAGATGCTT 139 299 324 Antisense
GCTTGAATTTTTTATCGGGTTGACA 155 307 345 Antisense
CGGGTTGACACCATACGATTTCGAT 548 199 360 Antisense
GATGCACAAAAGACCGGAGACTCAC 412 413 382 Antisense
Sequence Source Affymetrix Proprietary Database