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[182569_at]

Description Y71H9A.1 /REP_DB=WormBase Gene ID /WP=CE19266 /TR=Q9XWC7 /GB=CAA21749.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 01      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 6.2
(-2.4)
A 		3.3
(-3)
A 		4.2
(-2.8)
A 		33.7
(3)
A 		30
B 39.6
(3)
A 		8
(-3)
A 		39.6
(3)
A 		9.8
(-2.7)
A 		32
C 12.1
(-2.5)
A 		4.2
(-2.9)
A 		2.5
(-3)
A 		111.4
(3)
A 		109
avr 19.3
(-1.2) 		5.2
(-3) 		15.4
(-1.7) 		51.6
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 6.6
(-2.5)
A 		3.9
(-3)
A 		35.1
(3)
A 		10.5
(-1.7)
A 		5.8
(-2.6)
A 		6
(-2.6)
A 		31
B 6.9
(-2)
A 		31.7
(3)
A 		6.6
(-2)
A 		2.8
(-2.8)
A 		17.3
(0.1)
A 		1.7
(-3)
A 		30
C 6.6
(-2.2)
A 		27.5
(0.8)
A 		3.9
(-2.6)
A 		42.3
(3)
A 		3.1
(-2.8)
A 		1.4
(-3)
A 		41
avr 6.7
(-1.8) 		21
(3) 		15.2
(1.1) 		18.5
(2.2) 		8.7
(-1.1) 		3
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.3
(-0.7)
A 		0.7
(-3)
A 		1.1
(-2.4)
A 		4.9
(3)
A 		4
B 12.6
(3)
A 		2
(-3)
A 		9.2
(1.1)
A 		2.1
(-2.9)
A 		11
C 4
(-2)
A 		1.2
(-2.9)
A 		0.9
(-3)
A 		18.8
(3)
A 		18
avr 6.3
(1.1) 		1.3
(-3) 		3.7
(-1) 		8.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.2
(-3)
A 		1.4
(-2.8)
A 		7.6
(3)
A 		2.7
(-1.6)
A 		1.7
(-2.5)
A 		1.5
(-2.7)
A 		6
B 2.4
(-1.9)
A 		10.6
(3)
A 		1.6
(-2.4)
A 		0.7
(-2.9)
A 		7
(0.8)
A 		0.6
(-3)
A 		10
C 2.5
(-1.5)
A 		8.4
(2.9)
A 		1
(-2.6)
A 		8.5
(3)
A 		1
(-2.6)
A 		0.5
(-3)
A 		8
avr 2
(-1.9) 		6.8
(3) 		3.4
(-0.5) 		4
(0.2) 		3.2
(-0.7) 		0.9
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17241
Sequence Type Exemplar sequence
Representative Public ID Y71H9A.1 NCBI
Target Description Y71H9A.1 /REP_DB=WormBase Gene ID /WP=CE19266 /TR=Q9XWC7 /GB=CAA21749.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077541(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077541 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-44) (twk-44) mRNA, complete cds. 11/11 None
GENEFINDER00000027348 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11624181:11627034:-1 11/11 None
Y71H9A.1 ENSEMBL cdna:known chromosome:CEL140:X:11624181:11628384:-1 gene:Y71H9A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027345 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11624180-11628384(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol twk-44
Ensembl Y71H9A.1
Entrez Gene 181349 Entrez gene
SwissProt Q9XWC7 EMBL-EBI
WormBase CE19266 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6811 ion transport inferred from electronic annotation QuickGO AmiGO
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5216 ion channel activity inferred from electronic annotation QuickGO AmiGO
5267 potassium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21749 Hypothetical protein Y71H9A.1 [Caenorhabditis elegans] ref|NP_509942.1| TWiK family of potassium channels family member (twk-44) [Caenorhabditis elegans] 0.0
blast CAE70606 Hypothetical protein CBG17283 [Caenorhabditis briggsae] 0.0
blast CAE56818 Hypothetical protein CBG24632 [Caenorhabditis briggsae] 1.0E-19
blast CAE56818 Hypothetical protein CBG24632 [Caenorhabditis briggsae] 2.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509942.1 6 213-235,399-421,434-456,492-514,521-538,548-570
Y71H9A.1 6 213-235,399-421,434-456,492-514,521-538,548-570
GENEFINDER00000027348 6 67-89,253-275,288-310,346-368,375-392,402-424
Sequence
Target Sequence 
>C. ELEGANS:182569_AT
gcctcttattctggctataggagtcgcatttggctggatgtttttatgtgctgcaatatt
tctacgatttgaaaaagattgggattattttaaaagtttttattttttcttttgttcatt
aactacaattggatatggtgacgttacaccaactaatagcgaagatatgtttattatttt
tggtttgattatcatcggtttatcattggtttctatgtgtatcaatgtaatccaactaaa
attggagaaacttttcgaggagcttctcctcactttaatggaagagttgaatgcagatcc
agatggcacccgtttgaaagctgatactattggcgcgcgagaaatgtggagagcttggaa
gaaacgacgaggaaagctgaaggatggtttggaaagggcaaaaggagccagagatgttgc
taataaagctagcgaaaatttcgttaaggttcgtgaaccgtgcagacgttacaaaatgaa
aattacaaaaatgtcactaataacgtgtaaaaacaaaaacttttattctacagaaaatgc
tgccattttctcgcaagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTCTTATTCTGGCTATAGGAGTC 51 279 1488 Antisense
GGAGTCGCATTTGGCTGGATGTTTT 383 517 1507 Antisense
ATGTGCTGCAATATTTCTACGATTT 272 49 1533 Antisense
GTGACGTTACACCAACTAATAGCGA 272 483 1625 Antisense
AGAAACTTTTCGAGGAGCTTCTCCT 167 73 1733 Antisense
GAGCTTCTCCTCACTTTAATGGAAG 293 387 1747 Antisense
GAATGCAGATCCAGATGGCACCCGT 302 331 1776 Antisense
GATGGCACCCGTTTGAAAGCTGATA 239 407 1789 Antisense
GAAAGCTGATACTATTGGCGCGCGA 333 359 1803 Antisense
GGTTCGTGAACCGTGCAGACGTTAC 171 507 1935 Antisense
AATGCTGCCATTTTCTCGCAAGAGA 703 165 2023 Antisense
Sequence Source Affymetrix Proprietary Database