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[182568_at]

Description T25D1.1 /REP_DB=WormBase Gene ID /WP=CE05017 /TR=Q22779 /GB=AAA82466.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 6.9
(-3)
A 		6.7
(-3)
A 		10.2
(-2.7)
A 		71.1
(3)
A 		64
B 23.5
(3)
A 		6.7
(-2.6)
A 		5.5
(-3)
A 		10.8
(-1.2)
A 		18
C 38.7
(-1.2)
A 		13.5
(-2.7)
A 		7.8
(-3)
A 		110.1
(3)
A 		102
avr 23
(-1.4) 		9
(-2.9) 		7.8
(-3) 		64
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 10.2
(3)
A 		9.1
(2.1)
A 		8.5
(1.7)
A 		2.6
(-3)
A 		3.7
(-2.1)
A 		3.6
(-2.2)
A 		8
B 5.4
(-2.5)
A 		10.5
(-1.8)
A 		43.6
(3)
A 		8.4
(-2.1)
A 		4.6
(-2.6)
A 		2
(-3)
A 		42
C 5.5
(-0.4)
A 		9.4
(3)
A 		4.1
(-1.7)
A 		6.9
(0.8)
A 		2.6
(-3)
A 		4.3
(-1.5)
A 		7
avr 7
(-1.6) 		9.7
(-0.5) 		18.7
(3) 		6
(-1.9) 		3.6
(-2.9) 		3.3
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.5
(-2.3)
A 		1.4
(-3)
A 		2.7
(-2.1)
A 		10.4
(3)
A 		9
B 7.5
(3)
A 		1.7
(-2.6)
A 		1.3
(-3)
A 		2.3
(-2)
A 		6
C 12.8
(0.8)
A 		3.9
(-2.5)
A 		2.7
(-3)
A 		18.6
(3)
A 		16
avr 7.6
(1) 		2.3
(-2.9) 		2.2
(-3) 		10.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.9
(-0.1)
A 		3.2
(3)
A 		1.9
(-0.1)
A 		0.7
(-3)
A 		1.1
(-2)
A 		0.9
(-2.5)
A 		3
B 1.9
(-2.3)
A 		3.5
(-1.3)
A 		10.6
(3)
A 		2.2
(-2.1)
A 		1.9
(-2.3)
A 		0.7
(-3)
A 		10
C 2
(0.4)
A 		2.9
(3)
A 		1
(-2.4)
A 		1.4
(-1.3)
A 		0.8
(-3)
A 		1.4
(-1.3)
A 		2
avr 1.9
(-1.5) 		3.2
(0.8) 		4.5
(3) 		1.4
(-2.3) 		1.3
(-2.5) 		1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17759
Sequence Type Exemplar sequence
Representative Public ID T25D1.1 NCBI
Target Description T25D1.1 /REP_DB=WormBase Gene ID /WP=CE05017 /TR=Q22779 /GB=AAA82466.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078278(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078278 NCBI Caenorhabditis elegans T25D1.1 (T25D1.1) mRNA, complete cds. 11/11 A 
T25D1.1 ENSEMBL cdna:known chromosome:CEL140:X:16518050:16522208:1 gene:T25D1.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039071 1/11 Cross Hyb Matching Probes None
SNAP00000025927 7/11 Cross Hyb Matching Probes None
GENEFINDER00000025931 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16518049-16522208(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T25D1.1
Entrez Gene 188889 Entrez gene
SwissProt Q22779 EMBL-EBI
WormBase CE05017 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82466 Hypothetical protein T25D1.1 [Caenorhabditis elegans] ref|NP_510679.1| T25D1.1 [Caenorhabditis elegans] 0.0
blast NP_508311 C36C9.4 [Caenorhabditis elegans] gb|AAC67426.1| Hypothetical protein C36C9.4 [Caenorhabditis elegans] 4.0E-57
blast CAB70252 Hypothetical protein M199.2 [Caenorhabditis elegans] ref|NP_502824.1| M199.2 [Caenorhabditis elegans] 3.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510679.1 1 145-167
T25D1.1 1 145-167
Sequence
Target Sequence 
>C. ELEGANS:182568_AT
atcaattcttcatcaaactcgccgatttcttcattcacggattcggccaaaaaccaacgg
gagatcgaagagaattcgtcaaaaatttgctcgtcgaagtgatgcacaacaaattgaatc
gcattcgaaatcgctacaatcaagaaaaaggtgcaaacaaaagtgaggaggcgggaaaat
ggatgcaaatggagctcaaaaaggaaaattgcggagaactagtgaggttgcctggtgtcc
ttttcctatcccgaatccaacaccaaaacctgaaattttggcggagagaaccagagtggt
catgtgctcgaactaaccgcggttcctactcggctccaactcggctccttcgtgctgcaa
caaaattttgtaaagcagaaatctgtgtgtgcaacttgccgccgcggtgtttgcgtactt
gcacaccaacacggctgcaacttccatctgcaagcaatgacgtttgggacgatgaagatg
tggaaaacgatgccttcgaaacaccagttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAATTCTTCATCAAACTCGCCGA 75 27 1262 Antisense
ATCAAACTCGCCGATTTCTTCATTC 525 27 1273 Antisense
TTCTTCATTCACGGATTCGGCCAAA 12 689 1288 Antisense
TTTGCTCGTCGAAGTGATGCACAAC 456 667 1347 Antisense
GAATCGCATTCGAAATCGCTACAAT 647 329 1377 Antisense
GAACCAGAGTGGTCATGTGCTCGAA 615 345 1549 Antisense
GGCTCCTTCGTGCTGCAACAAAATT 111 535 1604 Antisense
GAAATCTGTGTGTGCAACTTGCCGC 206 363 1639 Antisense
GGTGTTTGCGTACTTGCACACCAAC 534 499 1667 Antisense
GCTGCAACTTCCATCTGCAAGCAAT 376 297 1695 Antisense
AACGATGCCTTCGAAACACCAGTTC 106 145 1747 Antisense
Sequence Source Affymetrix Proprietary Database