[Home] | [Total List]

[182567_at]

Description T10B5.4 /REP_DB=WormBase Gene ID /WP=CE28254 /TR=O76405 /GB=AAK68398.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 81.5
(1.2)
A 		107.6
(3)
A 		22.7
(-3)
A 		84.1
(1.3)
A 		85
B 120.8
(3)
P 		78.1
(-1.3)
A 		61.3
(-3)
A 		78.2
(-1.3)
A 		60
C 103.6
(3)
P 		60.1
(-0.1)
A 		20.6
(-3)
A 		77
(1.1)
A 		83
avr 102
(3) 		81.9
(1.2) 		34.9
(-3) 		79.8
(1) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 266.3
(3)
P 		156.5
(-0.1)
P 		106.2
(-1.5)
A 		151.8
(-0.2)
P 		111.1
(-1.3)
P 		51.4
(-3)
A 		215
B 145.7
(1)
P 		179.5
(3)
P 		99.7
(-1.7)
P 		131.3
(0.2)
A 		76.8
(-3)
A 		85.9
(-2.5)
A 		103
C 88.1
(-1.4)
P 		193.2
(3)
P 		139.4
(0.7)
A 		122.8
(0.1)
M 		49.9
(-3)
A 		80.2
(-1.7)
A 		143
avr 166.7
(2.4) 		176.4
(3) 		115.1
(-0.5) 		135.3
(0.6) 		79.3
(-2.6) 		72.5
(-3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 29.7
(3)
A 		23.3
(1.4)
A 		5.9
(-3)
A 		12.3
(-1.4)
A 		24
B 38.5
(3)
P 		19.3
(-1.7)
A 		14.2
(-3)
A 		16.7
(-2.4)
A 		24
C 34.3
(3)
P 		17.3
(-0.8)
A 		7.2
(-3)
A 		13
(-1.7)
A 		27
avr 34.2
(3) 		20
(-0.4) 		9.1
(-3) 		14
(-1.8) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 49.1
(2.1)
P 		55.7
(3)
P 		23.1
(-1.5)
A 		38.5
(0.6)
P 		33.5
(-0.1)
P 		12.5
(-3)
A 		43
B 50.7
(1.5)
P 		59.7
(3)
P 		24.2
(-3)
P 		34.8
(-1.2)
A 		31.2
(-1.8)
A 		32
(-1.7)
A 		36
C 32.7
(-0.7)
P 		58.9
(3)
P 		35.5
(-0.3)
A 		24.7
(-1.8)
M 		16.2
(-3)
A 		26.9
(-1.5)
A 		43
avr 44.2
(0.6) 		58.1
(3) 		27.6
(-2.3) 		32.7
(-1.4) 		27
(-2.4) 		23.8
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182567_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15711
Sequence Type Exemplar sequence
Representative Public ID T10B5.4 NCBI
Target Description T10B5.4 /REP_DB=WormBase Gene ID /WP=CE28254 /TR=O76405 /GB=AAK68398.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071120
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000014352 ENSEMBL cdna:SNAP chromosome:CEL140:V:1870404:1871528:-1 None
NM_071120 NCBI Caenorhabditis elegans T10B5.4 (T10B5.4) mRNA, complete cds. A 
SNAP00000014353 ENSEMBL cdna:SNAP chromosome:CEL140:V:1871640:1872018:-1 None
T10B5.4 ENSEMBL cdna:known chromosome:CEL140:V:1870429:1871577:-1 gene:T10B5.4 A 
GENEFINDER00000014361 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1870404:1871528:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1870747-1871966(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B5.4
Entrez Gene 178668 Entrez gene
SwissProt O76405 EMBL-EBI
WormBase CE28254 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8080 N-acetyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68398 Hypothetical protein T10B5.4 [Caenorhabditis elegans] ref|NP_503521.1| T10B5.4 [Caenorhabditis elegans] 1.0E-123
blast AAK68398 Hypothetical protein T10B5.4 [Caenorhabditis elegans] ref|NP_503521.1| T10B5.4 [Caenorhabditis elegans] 6.0E-97
blast AAK68398 Hypothetical protein T10B5.4 [Caenorhabditis elegans] ref|NP_503521.1| T10B5.4 [Caenorhabditis elegans] 8.0E-97
blast CAE74145 Hypothetical protein CBG21816 [Caenorhabditis briggsae] 5.0E-92
blast CAE74145 Hypothetical protein CBG21816 [Caenorhabditis briggsae] 3.0E-90
blast CAE74145 Hypothetical protein CBG21816 [Caenorhabditis briggsae] 1.0E-75
blast T33228 hypothetical protein T10B5.4 - Caenorhabditis elegans 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 7.7E-9
Sequence
Target Sequence 
>C. ELEGANS:182567_AT
tattccttctcgaaacaattcccaggagcggcgcgtgcttgcgtcgcggctcgcggccac
ggccaccagccacaaatgcgctccattgagaatattgcaaagcagagctctcagaagctc
cataatcgtcgagtagacacttcgcttcccgcaaattctagaaaaaaaagtgttcaggaa
atcgtggcagtttgcctgaatgccgtcaaagaatgctcttttgtttccgaatcgacccca
ttcaatccacactgggattttaacgcagaaatcacaaatggccagtacaaacacgaaaat
gccaacaagttggtggcattcgtgcaggttttggagcaagacttgtcgtttttgactgga
aatccgaaaaaagtcttcaaaatcgatgtgctgtgcgtgtcgaaggcttgtcaagggaag
ggaatcggaagacagctcgtcgagaagagtctggaaaatgctgtgaaggaagattgcgag
tacgtggcaaccgttgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCCTTCTCGAAACAATTCCCAG 179 665 106 Antisense
CAGCCACAAATGCGCTCCATTGAGA 451 201 172 Antisense
GCTCTCAGAAGCTCCATAATCGTCG 230 301 212 Antisense
ATCGTCGAGTAGACACTTCGCTTCC 672 35 230 Antisense
CTTCGCTTCCCGCAAATTCTAGAAA 637 219 245 Antisense
GTGGCAGTTTGCCTGAATGCCGTCA 309 491 289 Antisense
GTGGCATTCGTGCAGGTTTTGGAGC 546 489 418 Antisense
GGAGCAAGACTTGTCGTTTTTGACT 38 521 438 Antisense
GCTGTGCGTGTCGAAGGCTTGTCAA 215 295 495 Antisense
GGGAATCGGAAGACAGCTCGTCGAG 510 493 525 Antisense
TGCGAGTACGTGGCAACCGTTGCAA 590 579 580 Antisense
Sequence Source Affymetrix Proprietary Database