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[182566_at]

Description K10C2.6 /REP_DB=WormBase Gene ID /WP=CE04752 /TR=Q94274 /GB=AAK39261.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 14.8
(-0.6)
A 		2.4
(-3)
A 		2.6
(-3)
A 		33.5
(3)
A 		31
B 8.4
(3)
A 		1.6
(-2.4)
A 		0.9
(-3)
A 		0.9
(-3)
A 		8
C 2.4
(-2.9)
A 		3.5
(-2.7)
A 		2
(-3)
A 		33.9
(3)
A 		32
avr 8.5
(-1.1) 		2.5
(-2.8) 		1.8
(-3) 		22.8
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 10
(-0.6)
A 		1.9
(-2.9)
A 		2
(-2.8)
A 		1.8
(-2.9)
A 		23.2
(3)
A 		1.4
(-3)
A 		22
B 0.9
(-2.9)
A 		17.8
(3)
A 		8.8
(-0.1)
A 		2.7
(-2.2)
A 		9.9
(0.3)
A 		0.5
(-3)
A 		17
C 2.6
(-0.9)
A 		3.4
(-0)
A 		1.3
(-2.4)
A 		3.6
(0.2)
A 		6
(3)
A 		0.8
(-3)
A 		5
avr 4.5
(-1.2) 		7.7
(0.4) 		4
(-1.5) 		2.7
(-2.1) 		13
(3) 		0.9
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 5.4
(3)
A 		0.5
(-3)
A 		0.7
(-2.8)
A 		4.9
(2.4)
A 		5
B 2.7
(3)
A 		0.4
(-2.5)
A 		0.2
(-3)
A 		0.2
(-3)
A 		3
C 0.8
(-2.9)
A 		1
(-2.6)
A 		0.7
(-3)
A 		5.7
(3)
A 		5
avr 3
(1.8) 		0.6
(-2.8) 		0.5
(-3) 		3.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.8
(-1.7)
A 		0.7
(-2.6)
A 		0.4
(-2.9)
A 		0.5
(-2.8)
A 		7
(3)
A 		0.3
(-3)
A 		7
B 0.3
(-2.9)
A 		5.9
(3)
A 		2.1
(-1)
A 		0.7
(-2.5)
A 		4
(1)
A 		0.2
(-3)
A 		6
C 1
(-0.4)
A 		1
(-0.4)
A 		0.3
(-3)
A 		0.7
(-1.5)
A 		1.9
(3)
A 		0.3
(-3)
A 		2
avr 1
(-2) 		2.5
(0.3) 		0.9
(-2.1) 		0.6
(-2.6) 		4.3
(3) 		0.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182566_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16814
Sequence Type Exemplar sequence
Representative Public ID K10C2.6 NCBI
Target Description K10C2.6 /REP_DB=WormBase Gene ID /WP=CE04752 /TR=Q94274 /GB=AAK39261.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076684 NCBI Caenorhabditis elegans K10C2.6 (K10C2.6) mRNA, complete cds. 11/11 None
K10C2.6 ENSEMBL cdna:known chromosome:CEL140:X:6451299:6451816:1 gene:K10C2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6451298-6451816(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10C2.6
Entrez Gene 187254 Entrez gene
SwissProt Q94274 EMBL-EBI
WormBase CE04752 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39261 Hypothetical protein K10C2.6 [Caenorhabditis elegans] ref|NP_509085.1| K10C2.6 [Caenorhabditis elegans] 2.0E-62
blast D89551 protein K10C2.6 [imported] - Caenorhabditis elegans pir||T25815 hypothetical protein K10C2.6 - Caenorhabditis elegans (fragment) 4.0E-57
Sequence
Target Sequence 
>C. ELEGANS:182566_AT
gttgttcccgaatttccatatttctttttcgaaacatatcataagaattttgaaattttt
ttgaattttacaaattcggtgtctttttcggaaatattaactgttgcgtctataaaactg
tgttccatattctcaaagataattttgaacattttttattcgacctttgcgaactttgta
ttttggtttcaattcgaaaattctctgaagagcgaagcattcaaattcactttatttgca
catcctttaaggatgatccttagacagttatctgaagttcggatgcgtcaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTTCCCGAATTTCCATATTTCT 128 437 34 Antisense
TTTCCATATTTCTTTTTCGAAACAT 406 669 46 Antisense
GGAAATATTAACTGTTGCGTCTATA 549 525 123 Antisense
GTTGCGTCTATAAAACTGTGTTCCA 268 439 136 Antisense
AACTGTGTTCCATATTCTCAAAGAT 529 143 149 Antisense
GAACATTTTTTATTCGACCTTTGCG 289 351 180 Antisense
CGACCTTTGCGAACTTTGTATTTTG 189 251 194 Antisense
AGAGCGAAGCATTCAAATTCACTTT 530 67 242 Antisense
AATTCACTTTATTTGCACATCCTTT 46 177 257 Antisense
GGATGATCCTTAGACAGTTATCTGA 178 515 284 Antisense
TATCTGAAGTTCGGATGCGTCACCC 460 657 302 Antisense
Sequence Source Affymetrix Proprietary Database