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[182565_at]

Description F10G2.2 /REP_DB=WormBase Gene ID /WP=CE09330 /TR=Q22956 /GB=AAG24057.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_high_8_8 > 36      6grp_highest_nonorm > 52      6grp_total > 30      4grp_total > 51      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 195.1
(0.8)
P 		290.1
(3)
P 		159.9
(-0)
P 		31.1
(-3)
A 		259
B 183.1
(-0.1)
P 		344.9
(3)
P 		135.7
(-1)
P 		31.9
(-3)
A 		313
C 199.6
(-0.8)
P 		318.8
(3)
P 		189.4
(-1.1)
P 		129.8
(-3)
P 		189
avr 192.6
(0) 		317.9
(3) 		161.7
(-0.7) 		64.3
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1008
1 2 3 4 5 6 range
A 381
(-1.3)
P 		711.3
(0.7)
P 		1092.6
(3)
P 		882.1
(1.7)
P 		397.6
(-1.2)
P 		94.3
(-3)
P 		998
B 349
(-0.7)
P 		783.8
(3)
P 		689.1
(2.2)
P 		729.3
(2.5)
P 		440
(0)
P 		85
(-3)
P 		699
C 422.6
(-0.3)
P 		754.8
(2.7)
P 		712.4
(2.3)
P 		791.8
(3)
P 		389.1
(-0.6)
P 		113.9
(-3)
P 		678
avr 384.2
(-0.7) 		750
(2.3) 		831.4
(3) 		801.1
(2.8) 		408.9
(-0.5) 		97.7
(-3) 		734
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 71
(3)
P 		63
(2.3)
P 		41.8
(0.4)
P 		4.6
(-3)
A 		66
B 58.4
(0.9)
P 		85.2
(3)
P 		31.4
(-1.1)
P 		6.8
(-3)
A 		78
C 66.1
(0.8)
P 		91.6
(3)
P 		66
(0.8)
P 		21.9
(-3)
P 		70
avr 65.2
(1.7) 		79.9
(3) 		46.4
(0.1) 		11.1
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 70.2
(-1.8)
P 		253
(3)
P 		237.9
(2.6)
P 		223.7
(2.2)
P 		120
(-0.5)
P 		23
(-3)
P 		230
B 121.4
(-0.7)
P 		260.9
(3)
P 		167.3
(0.5)
P 		193.2
(1.2)
P 		178.8
(0.9)
P 		31.7
(-3)
P 		229
C 156.6
(0.7)
P 		230.3
(3)
P 		181.3
(1.5)
P 		159.2
(0.8)
P 		125.9
(-0.3)
P 		38.1
(-3)
P 		192
avr 116.1
(-0.6) 		248.1
(3) 		195.5
(1.5) 		192
(1.5) 		141.6
(0.1) 		30.9
(-3) 		217
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182565_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12481
Sequence Type Exemplar sequence
Representative Public ID F10G2.2 NCBI
Target Description F10G2.2 /REP_DB=WormBase Gene ID /WP=CE09330 /TR=Q22956 /GB=AAG24057.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072465(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072465 NCBI Caenorhabditis elegans F10G2.2 (F10G2.2) mRNA, complete cds. 11/11 None
F10G2.2 ENSEMBL cdna:known chromosome:CEL140:V:7333834:7334241:1 gene:F10G2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010645 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7333834-7334242(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10G2.2
Entrez Gene 184313 Entrez gene
SwissProt Q22956 EMBL-EBI
WormBase CE09330 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504866 F10G2.2 [Caenorhabditis elegans] gb|AAG24057.1| Hypothetical protein F10G2.2 [Caenorhabditis elegans] 5.0E-63
Sequence
Target Sequence 
>C. ELEGANS:182565_AT
atgtcttccaagtcgtttctgattctaacactctttattgctatttctaaattggaagca
ctcatttgctacgagaaaaatttaggcggagaaggtgttaaaacatcggacaaaatagct
gcttgcctgtcgtttttccatgctgaatctcgcgtggcatcgttcggttggaagatgtcg
aaaatcactgaaaaattgaacaaggaaagccaaaacaaagaaaaatattgtgaacaagtt
atcgacaacacattgggagaagagggaattttgtgtttgtgctttaccaatttttgcaat
accccaattacattcgacgagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTTCCAAGTCGTTTCTGATTC 340 49 13 Antisense
GTCGTTTCTGATTCTAACACTCTTT 514 473 24 Antisense
TAACACTCTTTATTGCTATTTCTAA 664 639 38 Antisense
TTGGAAGCACTCATTTGCTACGAGA 418 709 64 Antisense
CAAAATAGCTGCTTGCCTGTCGTTT 70 191 123 Antisense
CTGTCGTTTTTCCATGCTGAATCTC 102 239 139 Antisense
TCCATGCTGAATCTCGCGTGGCATC 239 591 149 Antisense
GCGTGGCATCGTTCGGTTGGAAGAT 251 293 164 Antisense
GGAATTTTGTGTTTGTGCTTTACCA 272 533 277 Antisense
TACCAATTTTTGCAATACCCCAATT 581 649 297 Antisense
ATACCCCAATTACATTCGACGAGTT 559 21 311 Antisense
Sequence Source Affymetrix Proprietary Database