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[182564_at]

Description W09B6.3 /REP_DB=WormBase Gene ID /WP=CE27223 /TR=Q9GZI7 /GB=AAG00030.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 34      6grp_total > 0      4grp_total > 38      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 243.3
(-3)
P 		324.1
(3)
P 		248.6
(-2.6)
A 		270
(-1)
A 		81
B 361.9
(3)
P 		170.1
(-2.5)
P 		151.8
(-3)
P 		198.6
(-1.7)
P 		210
C 280
(3)
P 		227
(0.1)
P 		170.3
(-3)
P 		257.6
(1.8)
A 		110
avr 295.1
(3) 		240.4
(-0.1) 		190.2
(-3) 		242.1
(-0) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 122.1
(-3)
A 		278.9
(3)
A 		167.9
(-1.2)
A 		167.1
(-1.3)
P 		272.3
(2.7)
M 		234.3
(1.3)
P 		157
B 225.5
(1.7)
A 		233.8
(2.4)
P 		204
(-0.1)
P 		220.3
(1.3)
M 		167.8
(-3)
P 		241.5
(3)
P 		74
C 182
(-3)
A 		240.5
(-0)
M 		243.5
(0.1)
M 		211.1
(-1.5)
A 		299.7
(3)
P 		242.4
(0.1)
P 		118
avr 176.5
(-3) 		251.1
(3) 		205.1
(-0.7) 		199.5
(-1.2) 		246.6
(2.6) 		239.4
(2.1) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 88.6
(3)
P 		70.4
(0.8)
P 		65
(0.1)
A 		39.5
(-3)
A 		49
B 115.4
(3)
P 		42
(-2.5)
P 		35.2
(-3)
P 		42.3
(-2.5)
P 		80
C 92.7
(3)
P 		65.3
(-0.3)
P 		59.4
(-1.1)
P 		43.4
(-3)
A 		49
avr 98.9
(3) 		59.2
(-1.2) 		53.2
(-1.8) 		41.7
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 22.5
(-3)
A 		99.2
(3)
A 		36.6
(-1.9)
A 		42.4
(-1.4)
P 		82.2
(1.7)
M 		57.1
(-0.3)
P 		77
B 78.5
(1.3)
A 		77.8
(1.2)
P 		49.5
(-3)
P 		58.4
(-1.7)
M 		68.2
(-0.2)
P 		90
(3)
P 		41
C 67.4
(-0.3)
A 		73.4
(0.4)
M 		62
(-0.8)
M 		42.4
(-3)
A 		97
(3)
P 		81.2
(1.3)
P 		55
avr 56.1
(-1.6) 		83.5
(3) 		49.4
(-2.7) 		47.7
(-3) 		82.5
(2.8) 		76.1
(1.8) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5479
Sequence Type Exemplar sequence
Representative Public ID W09B6.3 NCBI
Target Description W09B6.3 /REP_DB=WormBase Gene ID /WP=CE27223 /TR=Q9GZI7 /GB=AAG00030.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061517(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061517 NCBI Caenorhabditis elegans W09B6.3 (W09B6.3) mRNA, complete cds. 10/11 None
SNAP00000001934 ENSEMBL cdna:SNAP chromosome:CEL140:II:1123542:1132128:1 10/11 None
GENEFINDER00000001941 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1123542:1127742:1 10/11 None
W09B6.3 ENSEMBL cdna:known chromosome:CEL140:II:1123540:1127773:1 gene:W09B6.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1123540-1125987(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09B6.3
Entrez Gene 173497 Entrez gene
SwissProt Q9GZI7 EMBL-EBI
WormBase CE32072 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00030 Hypothetical protein W09B6.3 [Caenorhabditis elegans] ref|NP_493918.2| W09B6.3 [Caenorhabditis elegans] 0.0
blast T32409 hypothetical protein W09B6.3 - Caenorhabditis elegans 0.0
blast T32410 hypothetical protein W09B6.2 - Caenorhabditis elegans 0.0
blast CAE74109 Hypothetical protein CBG21769 [Caenorhabditis briggsae] 1.0E-167
Protein Domains
Database ID Description E-Value
Pfam IPR004823 EMBL-EBI TATA box binding protein associated factor (TAF) 1.1E-29
Sequence
Target Sequence 
>C. ELEGANS:182564_AT
cgaatggtggacgttatcctggcggcagtaccattccgcgtcgaaatccacggaaacgtc
gataaaatcccatttttcgtcattgaaaagtgccgaaattcgccgggccgatccggcgcc
gctgtcatcacaaaaattatgaaaaatcattttatggaagcgaatttcctgcaaaattcc
gaatcgatctactttgattcgacgtcttgccactcgaatattctcgaaaaagtcagcatt
ggctcactgattaatgtgcttgccgaccccacatttgccacgtcatcatacaaatggtat
ggctatgacgtcactctgtgtaataattacctcgcccacgccagcacacagagaagcttt
gtactggaaaataatgagattctgcaaaattgtaagaagctcgaaaaatcgccggaagaa
gcggaaaccactacgaaaaatgatttgagatttgtgccaccgcagccggaaaagggagag
gttaagaaaaagtacggaaatctcgaaaatttcagcgaaaaatttgaaattccggcattt
ttgagcagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAATGGTGGACGTTATCCTGGCGG 438 253 613 Antisense
TACCATTCCGCGTCGAAATCCACGG 121 651 641 Antisense
CGAAATTCGCCGGGCCGATCCGGCG 104 253 706 Antisense
GATCTACTTTGATTCGACGTCTTGC 682 419 798 Antisense
CGACGTCTTGCCACTCGAATATTCT 698 251 812 Antisense
CACTGATTAATGTGCTTGCCGACCC 280 199 857 Antisense
ATGGCTATGACGTCACTCTGTGTAA 710 51 911 Antisense
CTGTGTAATAATTACCTCGCCCACG 333 239 928 Antisense
CCCACGCCAGCACACAGAGAAGCTT 61 259 947 Antisense
TGATTTGAGATTTGTGCCACCGCAG 193 565 1053 Antisense
GAAATTCCGGCATTTTTGAGCAGGA 321 363 1138 Antisense
Sequence Source Affymetrix Proprietary Database