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[182563_at]

Description R03A10.5 /REP_DB=WormBase Gene ID /WP=CE23889 /TR=Q21660 /GB=CAA93675.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 63      6grp_total > 83      4grp_total > 39      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 463
1 2 3 4 range
A 506.6
(3)
P 		208.3
(-2.7)
P 		191.7
(-3)
P 		277.3
(-1.4)
P 		315
B 654.3
(3)
P 		231.4
(-3)
P 		243.2
(-2.8)
P 		390
(-0.7)
P 		423
C 576.1
(3)
P 		258.5
(-2)
P 		193.2
(-3)
P 		376.9
(-0.1)
P 		383
avr 579
(3) 		232.7
(-2.6) 		209.4
(-3) 		348.1
(-0.7) 		370

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 804
1 2 3 4 5 6 range
A 325.8
(-3)
P 		476.8
(-1.8)
P 		549.4
(-1.2)
P 		967.2
(2.1)
P 		1077.2
(3)
P 		561.4
(-1.1)
P 		751
B 379.6
(-3)
P 		448
(-2.4)
P 		565.5
(-1.4)
P 		914.2
(1.7)
P 		1065.6
(3)
P 		608.3
(-1)
P 		686
C 273.4
(-3)
P 		653.2
(0)
P 		486.2
(-1.3)
P 		1032.9
(3)
P 		916.1
(2.1)
P 		733.2
(0.6)
P 		760
avr 326.3
(-3) 		526
(-1.3) 		533.7
(-1.2) 		971.4
(2.6) 		1019.6
(3) 		634.3
(-0.3) 		693
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 184.5
(3)
P 		45.2
(-2.8)
P 		50.1
(-2.6)
P 		40.6
(-3)
P 		144
B 208.6
(3)
P 		57.1
(-3)
P 		56.3
(-3)
P 		83.1
(-1.9)
P 		152
C 190.7
(3)
P 		74.3
(-2.5)
P 		67.3
(-2.8)
P 		63.5
(-3)
P 		127
avr 194.6
(3) 		58.9
(-3) 		57.9
(-3) 		62.4
(-2.8) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 60.1
(-3)
P 		169.6
(-0.5)
P 		119.6
(-1.7)
P 		245.3
(1.2)
P 		325
(3)
P 		136.7
(-1.3)
P 		265
B 132.1
(-3)
P 		149.1
(-2.7)
P 		137.3
(-2.9)
P 		242.1
(-0.8)
P 		432.9
(3)
P 		226.8
(-1.1)
P 		301
C 101.3
(-3)
P 		199.3
(0)
P 		123.7
(-2.3)
P 		207.7
(0.3)
P 		296.4
(3)
P 		245.4
(1.4)
P 		195
avr 97.8
(-3) 		172.7
(-1.2) 		126.9
(-2.3) 		231.7
(0.2) 		351.4
(3) 		203
(-0.5) 		254
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182563_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17855
Sequence Type Exemplar sequence
Representative Public ID R03A10.5 NCBI
Target Description R03A10.5 /REP_DB=WormBase Gene ID /WP=CE23889 /TR=Q21660 /GB=CAA93675.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078153(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078153 NCBI Caenorhabditis elegans R03A10.5 (R03A10.5) mRNA, complete cds. 11/11 None
SNAP00000023412 ENSEMBL cdna:SNAP chromosome:CEL140:X:15446648:15450115:1 11/11 None
GENEFINDER00000023417 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15446648:15450672:1 11/11 None
R03A10.5 ENSEMBL cdna:known chromosome:CEL140:X:15446647:15450209:1 gene:R03A10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15446647-15450115(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03A10.5
Entrez Gene 181634 Entrez gene
SwissProt Q21660 EMBL-EBI
WormBase CE34077 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93675 Hypothetical protein R03A10.5 [Caenorhabditis elegans] ref|NP_510554.2| R03A10.5 [Caenorhabditis elegans] 0.0
blast CAE63315 Hypothetical protein CBG07705 [Caenorhabditis briggsae] 1.0E-101
blast CAE63315 Hypothetical protein CBG07705 [Caenorhabditis briggsae] 1.0E-100
blast CAB02088 Hypothetical protein F20G2.3 [Caenorhabditis elegans] ref|NP_506408.1| F20G2.3 [Caenorhabditis elegans] 1.0E-79
Sequence
Target Sequence 
>C. ELEGANS:182563_AT
tgagagcacgcatggtggacctcgagcaaatgttgcatcatgttatggagcttgaagcaa
aaaccggaaagcaggcttggattctatacgtcatggatatcactggtctacaatataaca
agaagctgtatgatttggtgactggttccatgaaatcattggctgatttcatggccgacc
attatgtcgaaatgattaaggtaggggtcgtaaaaaatgctcaaacagtcaacgtaccct
atggaaaaattcatgttgtcacaaaattcatcaaggctggaagaaaactcagatggtggg
tgcgaggaaatcggaatttcggactcggagtttttcacagtgatgaggaacaagtcgccg
actttttcatagcaaagcaagtgtctccttgttttccatggatgccaggaccgactcttg
ttccgatggaagacgaggtcattgtaaaaaaggacgcctattaccatgtgtggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGAGCACGCATGGTGGACCTCGA 116 569 380 Antisense
GCAGGCTTGGATTCTATACGTCATG 223 311 450 Antisense
ACGTCATGGATATCACTGGTCTACA 50 95 467 Antisense
ATTGGCTGATTTCATGGCCGACCAT 325 3 537 Antisense
GCTCAAACAGTCAACGTACCCTATG 692 299 598 Antisense
TCGGACTCGGAGTTTTTCACAGTGA 697 605 698 Antisense
AAGTCGCCGACTTTTTCATAGCAAA 699 157 731 Antisense
AGCAAGTGTCTCCTTGTTTTCCATG 547 75 755 Antisense
GTTTTCCATGGATGCCAGGACCGAC 160 443 770 Antisense
ACCGACTCTTGTTCCGATGGAAGAC 346 89 789 Antisense
AAGGACGCCTATTACCATGTGTGGG 15 161 829 Antisense
Sequence Source Affymetrix Proprietary Database