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[182562_at]

Description Y44A6B.2 /REP_DB=WormBase Gene ID /WP=CE18385 /TR=O62450 /GB=CAA16374.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 03      6grp_total > 16      4grp_total > 06      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 62.3
(-0.4)
P 		10.4
(-3)
A 		58
(-0.6)
A 		129.5
(3)
P 		119
B 71.9
(0.8)
P 		58.9
(-3)
A 		73.3
(1.2)
A 		79.6
(3)
P 		21
C 90.7
(3)
P 		47
(-1.7)
A 		34.5
(-3)
A 		64.1
(0.2)
P 		56
avr 75
(1.2) 		38.8
(-3) 		55.3
(-1.1) 		91.1
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 87.3
(3)
P 		46.3
(-1.7)
P 		49.8
(-1.3)
P 		34.9
(-3)
A 		44.3
(-1.9)
P 		45.9
(-1.7)
A 		52
B 66.3
(0.8)
P 		79.7
(3)
P 		72.5
(1.8)
P 		43.4
(-3)
P 		54.8
(-1.1)
P 		46.9
(-2.4)
P 		36
C 74.8
(3)
P 		62.7
(1.2)
P 		59.9
(0.8)
A 		34.4
(-3)
A 		59.3
(0.7)
M 		53.8
(-0.1)
P 		40
avr 76.1
(3) 		62.9
(0.9) 		60.7
(0.6) 		37.6
(-3) 		52.8
(-0.6) 		48.9
(-1.2) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 22.7
(3)
P 		2.3
(-3)
A 		15.2
(0.8)
A 		19
(1.9)
P 		20
B 22.9
(3)
P 		14.5
(-3)
A 		17
(-1.2)
A 		17
(-1.2)
P 		8
C 30
(3)
P 		13.5
(-2.2)
A 		12
(-2.6)
A 		10.8
(-3)
P 		19
avr 25.2
(3) 		10.1
(-3) 		14.7
(-1.2) 		15.6
(-0.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 16.1
(2.7)
P 		16.5
(3)
P 		10.8
(-1.5)
P 		8.9
(-3)
A 		13.4
(0.6)
P 		11.2
(-1.2)
A 		8
B 23.1
(1.6)
P 		26.5
(3)
P 		17.6
(-0.6)
P 		11.5
(-3)
P 		22.3
(1.3)
P 		17.5
(-0.6)
P 		15
C 27.7
(3)
P 		19.1
(0.5)
P 		15.3
(-0.6)
A 		6.9
(-3)
A 		19.2
(0.5)
M 		18
(0.2)
P 		21
avr 22.3
(3) 		20.7
(2.3) 		14.6
(-0.5) 		9.1
(-3) 		18.3
(1.2) 		15.6
(-0) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182562_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13400
Sequence Type Exemplar sequence
Representative Public ID Y44A6B.2 NCBI
Target Description Y44A6B.2 /REP_DB=WormBase Gene ID /WP=CE18385 /TR=O62450 /GB=CAA16374.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075588(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075588 NCBI Caenorhabditis elegans Serpentine Receptor, class XA family member (srxa-15) (srxa-15) mRNA, complete cds. 11/11 None
GENEFINDER00000021704 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20637645:20642407:1 11/11 None
Y44A6B.2 ENSEMBL cdna:known chromosome:CEL140:V:20640340:20641626:1 gene:Y44A6B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20640339-20641626(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srxa-15
Ensembl Y44A6B.2
Entrez Gene 189895 Entrez gene
SwissProt O62450 EMBL-EBI
WormBase CE38238 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16374 Hypothetical protein Y44A6B.2 [Caenorhabditis elegans] ref|NP_507989.2| Serpentine Receptor, class XA family member (srxa-15) [Caenorhabditis elegans] 1.0E-158
blast CAA16374 Hypothetical protein Y44A6B.2 [Caenorhabditis elegans] ref|NP_507989.2| Serpentine Receptor, class XA family member (srxa-15) [Caenorhabditis elegans] 1.0E-157
blast CAA16373 Hypothetical protein Y44A6B.1 [Caenorhabditis elegans] ref|NP_507988.2| Serpentine Receptor, class XA family member (srxa-14) [Caenorhabditis elegans] 1.0E-134
blast CAA16374 Hypothetical protein Y44A6B.2 [Caenorhabditis elegans] ref|NP_507989.2| Serpentine Receptor, class XA family member (srxa-15) [Caenorhabditis elegans] 5.0E-97
blast CAE61694 Hypothetical protein CBG05641 [Caenorhabditis briggsae] 1.0E-92
blast CAE61694 Hypothetical protein CBG05641 [Caenorhabditis briggsae] 9.0E-57
blast CAA16373 Hypothetical protein Y44A6B.1 [Caenorhabditis elegans] ref|NP_507988.2| Serpentine Receptor, class XA family member (srxa-14) [Caenorhabditis elegans] 3.0E-56
blast CAE61693 Hypothetical protein CBG05640 [Caenorhabditis briggsae] 1.0E-49
blast CAE61694 Hypothetical protein CBG05641 [Caenorhabditis briggsae] 6.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 2.8E-90
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 5.1E-93
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 2.8E-90
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507989.2 7 4-26,38-60,75-97,118-140,170-192,233-255,270-292
Y44A6B.2 5 4-26,38-60,75-97,118-140,170-192
GENEFINDER00000021704 13 4-26,38-60,75-97,118-140,180-199,239-261,271-293,306-328,343-365,386-408,438-460,501-523,538-560
Sequence
Target Sequence 
>C. ELEGANS:182562_AT
tgaatttcgccgatttgccggttcctccttgacaatagttggtacatttttctatgagca
catattctacctaactattcttatgacactacaacgtgctcattcgataaaacgtccagc
gagcaaactggtcacggatcgaagagtgtggctggtttgtagcggttttggggtaatctc
acttattatattgataattccttttttatcaagttgccctgtcaacatcaaccaacgaaa
tctaagctttcaaggtgactgtcacgaagaaatacatccgataaccgcaattcaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATTTCGCCGATTTGCCGGTTCC 378 573 222 Antisense
CCGGTTCCTCCTTGACAATAGTTGG 615 261 239 Antisense
GAGCACATATTCTACCTAACTATTC 55 391 277 Antisense
GACACTACAACGTGCTCATTCGATA 583 365 306 Antisense
GAGCAAACTGGTCACGGATCGAAGA 710 389 342 Antisense
GAGTGTGGCTGGTTTGTAGCGGTTT 389 401 365 Antisense
GTAGCGGTTTTGGGGTAATCTCACT 273 439 380 Antisense
ATTCCTTTTTTATCAAGTTGCCCTG 271 1 418 Antisense
AAGTTGCCCTGTCAACATCAACCAA 226 157 432 Antisense
CTAAGCTTTCAAGGTGACTGTCACG 70 227 463 Antisense
ACATCCGATAACCGCAATTCAAAAT 308 105 495 Antisense
Sequence Source Affymetrix Proprietary Database