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[182561_at]

Description Y11D7A.9 /REP_DB=WormBase Gene ID /WP=CE20192 /TR=Q9XWR3 /GB=CAA21585.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 81      6grp_highest_nonorm > 54      6grp_total > 82      4grp_total > 49      6grp_highest_sub > 05      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1821
1 2 3 4 range
A 33.4
(-3)
A 		1295.5
(2)
P 		1547
(3)
P 		42.5
(-3)
A 		1514
B 25.4
(-3)
A 		1740.9
(3)
P 		1539.9
(2.3)
P 		68.2
(-2.9)
P 		1716
C 39.1
(-3)
A 		1449.3
(1.7)
P 		1846.2
(3)
P 		88.1
(-2.8)
P 		1807
avr 32.6
(-3) 		1495.2
(2.4) 		1644.4
(3) 		66.3
(-2.9) 		1612

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2072
1 2 3 4 5 6 range
A 101.9
(-3)
P 		1130.7
(0.3)
P 		1198.8
(0.5)
P 		1723.2
(2.2)
P 		1957.1
(3)
P 		291.1
(-2.4)
P 		1855
B 144.3
(-3)
P 		1367.7
(0.8)
P 		1278
(0.5)
P 		2051.7
(2.9)
P 		2100.5
(3)
P 		516.9
(-1.9)
P 		1956
C 107.4
(-3)
P 		1288.3
(0.4)
P 		813.4
(-1)
P 		2174.3
(3)
P 		1637.2
(1.4)
P 		533.8
(-1.8)
P 		2067
avr 117.9
(-3) 		1262.2
(0.7) 		1096.7
(0.1) 		1983.1
(3) 		1898.3
(2.7) 		447.3
(-1.9) 		1865
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 637
1 2 3 4 range
A 12.2
(-2.9)
A 		281.2
(1.1)
P 		404.4
(3)
P 		6.2
(-3)
A 		398
B 8.1
(-3)
A 		430
(3)
P 		356.8
(2)
P 		14.5
(-2.9)
P 		422
C 13
(-3)
A 		416.7
(0.8)
P 		643.5
(3)
P 		14.9
(-3)
P 		631
avr 11.1
(-3) 		376
(1.8) 		468.2
(3) 		11.9
(-3) 		457

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 835
1 2 3 4 5 6 range
A 18.8
(-3)
P 		402.1
(1)
P 		261.1
(-0.5)
P 		437
(1.4)
P 		590.6
(3)
P 		70.9
(-2.5)
P 		572
B 50.2
(-3)
P 		455.3
(0)
P 		310.3
(-1.1)
P 		543.4
(0.7)
P 		853.4
(3)
P 		192.8
(-1.9)
P 		803
C 39.8
(-3)
P 		393.1
(1.3)
P 		207
(-1)
P 		437.3
(1.9)
P 		529.8
(3)
P 		178.7
(-1.3)
P 		490
avr 36.3
(-3) 		416.8
(0.7) 		259.5
(-0.8) 		472.6
(1.2) 		657.9
(3) 		147.5
(-1.9) 		622
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182561_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8781
Sequence Type Exemplar sequence
Representative Public ID Y11D7A.9 NCBI
Target Description Y11D7A.9 /REP_DB=WormBase Gene ID /WP=CE20192 /TR=Q9XWR3 /GB=CAA21585.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069214(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069214 NCBI Caenorhabditis elegans Y11D7A.9 (Y11D7A.9) mRNA, complete cds. 11/11 None
SNAP00000011207 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9254237:9256076:-1 11/11 None
GENEFINDER00000011226 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9254237:9256076:-1 11/11 None
Y11D7A.9 ENSEMBL cdna:known chromosome:CEL140:IV:9254237:9256076:-1 gene:Y11D7A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9254242-9256082(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y11D7A.9
Entrez Gene 189434 Entrez gene
SwissProt Q9XWR3 EMBL-EBI
WormBase CE20192 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21585 Hypothetical protein Y11D7A.9 [Caenorhabditis elegans] ref|NP_501615.1| Y11D7A.9 [Caenorhabditis elegans] 1.0E-173
blast CAE69056 Hypothetical protein CBG15066 [Caenorhabditis briggsae] 1.0E-169
blast ABA00183 Hypothetical protein ZK185.4 [Caenorhabditis elegans] 7.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501615.1 6 47-69,100-122,143-162,172-191,212-234,244-266
Y11D7A.9 6 47-69,100-122,143-162,172-191,212-234,244-266
SNAP00000011207 6 47-69,100-122,143-162,172-191,212-234,244-266
GENEFINDER00000011226 6 47-69,100-122,143-162,172-191,212-234,244-266
Sequence
Target Sequence 
>C. ELEGANS:182561_AT
actttttctcttgtttcatgtgcctattcgagttgttgagctgatcacaggattttcccg
atacaaacgaatgagaaatgtgaactataaacgtgtatggctatatgaattaagtcgata
tttgtactttgtcgttggtttattggaactgattttcttatcgggcttatcaattattgg
cgaacgggaaaatattcaagttcatgtgattttcttctatgtttttggaatctgtggaat
tgttcacatgatttcaaacattttctgtcatgctcattcattgtattatctgaatccata
tggccgattatcatactacttgaaaattcttttcacatcactgtacgttctatctactcc
aattctcattgcttcatttattctctactggagaaaatgtataacttgggcgtacgatgt
tttcgcgttatgtgaatacagtggagtgttcctaaatatttgcttccacggatgtgcatt
ctttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTTTTCTCTTGTTTCATGTGCCT 369 103 321 Antisense
GTGCCTATTCGAGTTGTTGAGCTGA 694 477 340 Antisense
GAGCTGATCACAGGATTTTCCCGAT 505 387 358 Antisense
GGAACTGATTTTCTTATCGGGCTTA 514 525 465 Antisense
ACATTTTCTGTCATGCTCATTCATT 598 105 578 Antisense
ATCACTGTACGTTCTATCTACTCCA 11 29 657 Antisense
ATCTACTCCAATTCTCATTGCTTCA 706 31 672 Antisense
CATTGCTTCATTTATTCTCTACTGG 385 217 687 Antisense
GGGCGTACGATGTTTTCGCGTTATG 314 493 728 Antisense
TGTTCCTAAATATTTGCTTCCACGG 421 563 767 Antisense
GCTTCCACGGATGTGCATTCTTTGA 696 305 782 Antisense
Sequence Source Affymetrix Proprietary Database