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[182560_at]

Description F29F11.3 /REP_DB=WormBase Gene ID /WP=CE23690 /TR=Q19906 /GB=CAA98270.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 75      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 64      6grp_total > 75      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 406
1 2 3 4 range
A 681.5
(1.7)
P 		578.1
(-0.1)
P 		412
(-3)
P 		757.5
(3)
P 		346
B 799.2
(2.7)
P 		588.7
(-0.9)
P 		467.3
(-3)
P 		818.2
(3)
P 		351
C 700.3
(1.3)
P 		466
(-3)
P 		563
(-1.2)
P 		793.2
(3)
P 		327
avr 727
(1.8) 		544.3
(-1.8) 		480.8
(-3) 		789.6
(3) 		309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 682
1 2 3 4 5 6 range
A 596.6
(-3)
P 		649.9
(-2)
P 		907.2
(2.7)
P 		769.2
(0.2)
P 		694.1
(-1.2)
P 		924.5
(3)
P 		328
B 630.9
(-3)
P 		870.1
(-0.4)
P 		860.5
(-0.5)
P 		926.6
(0.3)
P 		798.3
(-1.2)
P 		1175.2
(3)
P 		544
C 514.4
(-3)
P 		922.2
(0.6)
P 		707.9
(-1.3)
P 		1091.1
(2.1)
P 		555
(-2.6)
P 		1196.4
(3)
P 		682
avr 580.6
(-3) 		814.1
(-0.3) 		825.2
(-0.2) 		929
(1) 		682.5
(-1.8) 		1098.7
(3) 		518
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 248.1
(3)
P 		125.5
(-2.2)
P 		107.7
(-3)
P 		110.9
(-2.9)
P 		140
B 254.8
(3)
P 		145.4
(-1.5)
P 		108.3
(-3)
P 		174.4
(-0.3)
P 		147
C 231.8
(3)
P 		134
(-3)
P 		196.2
(0.8)
P 		133.7
(-3)
P 		98
avr 244.9
(3) 		135
(-3) 		137.4
(-2.9) 		139.7
(-2.7) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 110
(-3)
P 		231.1
(3)
P 		197.6
(1.3)
P 		195.1
(1.2)
P 		209.5
(1.9)
P 		225.1
(2.7)
P 		121
B 219.5
(-2.7)
P 		289.6
(-0.9)
P 		209
(-3)
P 		245.4
(-2)
P 		324.4
(0)
P 		438.2
(3)
P 		229
C 190.7
(-2.7)
P 		281.4
(-0.2)
P 		180.2
(-3)
P 		219.4
(-1.9)
P 		179.6
(-3)
P 		400.5
(3)
P 		221
avr 173.4
(-3) 		267.4
(0.1) 		195.6
(-2.3) 		220
(-1.5) 		237.8
(-0.9) 		354.6
(3) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182560_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13494
Sequence Type Exemplar sequence
Representative Public ID F29F11.3 NCBI
Target Description F29F11.3 /REP_DB=WormBase Gene ID /WP=CE23690 /TR=Q19906 /GB=CAA98270.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073328 NCBI Caenorhabditis elegans F29F11.3 (F29F11.3) mRNA, complete cds. 11/11 None
SNAP00000022011 ENSEMBL cdna:SNAP chromosome:CEL140:V:10660895:10662180:1 11/11 None
GENEFINDER00000022020 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10660834:10662180:1 11/11 None
F29F11.3 ENSEMBL cdna:known chromosome:CEL140:V:10660826:10662180:1 gene:F29F11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10660833-10662180(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29F11.3
Entrez Gene 179483 Entrez gene
SwissProt Q19906 EMBL-EBI
WormBase CE23690 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98270 Hypothetical protein F29F11.3 [Caenorhabditis elegans] ref|NP_505729.1| F29F11.3 [Caenorhabditis elegans] 0.0
blast CAA98270 Hypothetical protein F29F11.3 [Caenorhabditis elegans] ref|NP_505729.1| F29F11.3 [Caenorhabditis elegans] 1.0E-179
blast CAA98270 Hypothetical protein F29F11.3 [Caenorhabditis elegans] ref|NP_505729.1| F29F11.3 [Caenorhabditis elegans] 1.0E-164
blast CAE64868 Hypothetical protein CBG09667 [Caenorhabditis briggsae] 1.0E-146
blast CAE64868 Hypothetical protein CBG09667 [Caenorhabditis briggsae] 1.0E-129
blast CAE64868 Hypothetical protein CBG09667 [Caenorhabditis briggsae] 1.0E-112
blast AAM48337 GH12861p [Drosophila melanogaster] 3.0E-16
blast AAM48337 GH12861p [Drosophila melanogaster] 2.0E-15
Sequence
Target Sequence 
>C. ELEGANS:182560_AT
gcttcatgttctgtcccgacatatagaaaagagttggaacgtgttctgaaagagaaatgt
cttcaaaaaattgcatgttcgatgggaatattaaagtgtatggttcctgaccatgccgat
gatttggggaggctagctattgatcaactgtgtcttggaagaggtggttctatatcaaca
ttggttacagtgaccgataaacgcccagacttcatgctgatccggccgctatgtgatatc
tctaaaaaagaattagcagtttataattacttatgtgacattgacaaacattgtatacat
atcgctcagcaaaataaccagcaaaaatcggttcagacgctgacggatgcgttcatctgc
acattggagaacgaaaagttttattcaacgatcaatacggttctaagcacagctgctaaa
attcataacacctcaataggaaaggacgattccaaatgttcgttttgcaatgtggaagtc
gctgattcggtttgctctacttgttcggcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCATGTTCTGTCCCGACATATA 487 305 511 Antisense
GTTCCTGACCATGCCGATGATTTGG 359 441 613 Antisense
TGGTTACAGTGACCGATAAACGCCC 656 551 692 Antisense
GATAAACGCCCAGACTTCATGCTGA 57 423 706 Antisense
CGGCCGCTATGTGATATCTCTAAAA 36 241 733 Antisense
ATCGGTTCAGACGCTGACGGATGCG 245 35 837 Antisense
GGATGCGTTCATCTGCACATTGGAG 600 511 855 Antisense
CAATACGGTTCTAAGCACAGCTGCT 357 181 903 Antisense
CAGCTGCTAAAATTCATAACACCTC 568 203 920 Antisense
TGGAAGTCGCTGATTCGGTTTGCTC 334 547 983 Antisense
CGGTTTGCTCTACTTGTTCGGCAAT 468 243 998 Antisense
Sequence Source Affymetrix Proprietary Database