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[182559_at]

Description C01G10.6 /REP_DB=WormBase Gene ID /WP=CE07815 /TR=Q93166 /GB=CAB02708.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 06      6grp_total > 07      4grp_total > 45      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 740
1 2 3 4 range
A 742.9
(3)
P 		436.8
(0.5)
P 		156.7
(-1.8)
P 		2.5
(-3)
A 		740
B 610.9
(3)
P 		358.2
(0.3)
P 		222
(-1.1)
P 		41.6
(-3)
A 		569
C 697.7
(3)
P 		504.1
(1.2)
P 		196.5
(-1.6)
P 		39.5
(-3)
A 		658
avr 683.8
(3) 		433
(0.7) 		191.7
(-1.5) 		27.9
(-3) 		656

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2388
1 2 3 4 5 6 range
A 1568.2
(3)
P 		774.6
(-0.1)
P 		617.9
(-0.7)
P 		429.2
(-1.5)
P 		155.2
(-2.5)
P 		37.5
(-3)
A 		1531
B 1481.5
(3)
P 		652.2
(-0.5)
P 		701.6
(-0.2)
P 		272.6
(-2)
P 		151.1
(-2.5)
P 		41.5
(-3)
A 		1440
C 2425.3
(3)
P 		590
(-1.6)
P 		853.4
(-1)
P 		402.7
(-2.1)
P 		224.2
(-2.6)
P 		46.9
(-3)
P 		2378
avr 1825
(3) 		672.3
(-0.9) 		724.3
(-0.7) 		368.2
(-1.9) 		176.8
(-2.5) 		42
(-3) 		1783
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 270.5
(3)
P 		94.8
(-0.9)
P 		41
(-2.1)
P 		0.4
(-3)
A 		270
B 194.8
(3)
P 		88.5
(-0.4)
P 		51.4
(-1.6)
P 		8.9
(-3)
A 		186
C 231
(3)
P 		144.9
(0.7)
P 		68.5
(-1.3)
P 		6.7
(-3)
A 		224
avr 232.1
(3) 		109.4
(-0.2) 		53.6
(-1.7) 		5.3
(-3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 890
1 2 3 4 5 6 range
A 289.1
(3)
P 		275.5
(2.7)
P 		134.6
(-0.3)
P 		108.8
(-0.9)
P 		46.8
(-2.2)
P 		9.1
(-3)
A 		280
B 515.5
(3)
P 		217.1
(-0.6)
P 		170.4
(-1.1)
P 		72.2
(-2.3)
P 		61.4
(-2.4)
P 		15.5
(-3)
A 		500
C 899
(3)
P 		180
(-1.9)
P 		217.2
(-1.6)
P 		81
(-2.6)
P 		72.6
(-2.6)
P 		15.7
(-3)
P 		883
avr 567.9
(3) 		224.2
(-0.7) 		174.1
(-1.3) 		87.3
(-2.2) 		60.3
(-2.5) 		13.4
(-3) 		555
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13132
Sequence Type Exemplar sequence
Representative Public ID C01G10.6 NCBI
Target Description C01G10.6 /REP_DB=WormBase Gene ID /WP=CE07815 /TR=Q93166 /GB=CAB02708.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074316 NCBI Caenorhabditis elegans C01G10.6 (C01G10.6) mRNA, complete cds. 11/11 None
SNAP00000004622 ENSEMBL cdna:SNAP chromosome:CEL140:V:15090271:15090826:1 11/11 None
GENEFINDER00000004639 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15090271:15090826:1 11/11 None
C01G10.6 ENSEMBL cdna:known chromosome:CEL140:V:15090271:15090826:1 gene:C01G10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15090270-15090826(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G10.6
Entrez Gene 182083 Entrez gene
SwissProt Q93166 EMBL-EBI
WormBase CE07815 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506717.1 1 4-26
C01G10.6 1 4-26
SNAP00000004622 1 4-26
GENEFINDER00000004639 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:182559_AT
ttctcctggctttcattgctcaggcacaagcctactacctctactactactacccaacca
acaacaatggataccaaacgtactattactacccgaataacaacaacaacaatggtcaaa
acacatactactacgataatggaaacaatggaaacactggaaccacctattactactacc
cgaataatggatatacttactacacctatccatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCCTGGCTTTCATTGCTCAGGC 62 693 38 Antisense
CTGGCTTTCATTGCTCAGGCACAAG 430 241 43 Antisense
TTGCTCAGGCACAAGCCTACTACCT 289 701 53 Antisense
CTACTACCCAACCAACAACAATGGA 708 225 84 Antisense
ACCCAACCAACAACAATGGATACCA 477 85 89 Antisense
TGGATACCAAACGTACTATTACTAC 350 549 105 Antisense
GGTCAAAACACATACTACTACGATA 426 501 151 Antisense
AATGGAAACACTGGAACCACCTATT 104 161 184 Antisense
AACACTGGAACCACCTATTACTACT 678 131 190 Antisense
ACCCGAATAATGGATATACTTACTA 234 87 215 Antisense
ATATACTTACTACACCTATCCATAC 48 15 228 Antisense
Sequence Source Affymetrix Proprietary Database