[Home] | [Total List]

[182558_at]

Description Y38H6A.3 /REP_DB=WormBase Gene ID /WP=CE20231 /TR=Q9XWU1 /GB=CAA21553.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 33
(0.1)
A 		21.8
(-1.2)
A 		6.7
(-3)
A 		57.4
(3)
A 		51
B 22.2
(2.7)
A 		20.8
(2.3)
A 		23
(3)
A 		4
(-3)
A 		19
C 4.5
(-3)
A 		12.7
(-1.1)
A 		11.1
(-1.4)
A 		29.8
(3)
A 		25
avr 19.9
(-0.8) 		18.4
(-1.3) 		13.6
(-3) 		30.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 86.4
(3)
P 		23.7
(-2)
A 		52.7
(0.3)
P 		49
(0)
P 		11.1
(-3)
A 		22.4
(-2.1)
A 		75
B 47.2
(2.8)
P 		12.7
(-2.5)
A 		15.2
(-2.1)
A 		48.8
(3)
A 		9.5
(-3)
A 		24.1
(-0.8)
M 		39
C 58.4
(3)
P 		27.5
(-0.4)
A 		54.2
(2.5)
A 		28
(-0.3)
A 		3.5
(-3)
A 		11.2
(-2.2)
A 		55
avr 64
(3) 		21.3
(-1.6) 		40.7
(0.5) 		41.9
(0.6) 		8
(-3) 		19.2
(-1.8) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12
(3)
A 		4.7
(-1.3)
A 		1.7
(-3)
A 		8.4
(0.9)
A 		10
B 7.1
(3)
A 		5.1
(1.1)
A 		5.3
(1.3)
A 		0.9
(-3)
A 		6
C 1.5
(-3)
A 		3.6
(0.6)
A 		3.9
(1.1)
A 		5
(3)
A 		4
avr 6.9
(3) 		4.5
(-1.4) 		3.6
(-3) 		4.8
(-0.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 15.9
(3)
P 		8.4
(-0.6)
A 		11.5
(0.9)
P 		12.4
(1.3)
P 		3.3
(-3)
A 		5.5
(-2)
A 		13
B 16.4
(3)
P 		4.2
(-2.8)
A 		3.7
(-3)
A 		12.9
(1.3)
A 		3.9
(-2.9)
A 		9
(-0.5)
M 		13
C 21.7
(3)
P 		8.4
(-0.9)
A 		13.8
(0.7)
A 		5.6
(-1.7)
A 		1.1
(-3)
A 		3.7
(-2.2)
A 		21
avr 18
(3) 		7
(-1.3) 		9.7
(-0.3) 		10.3
(-0) 		2.8
(-3) 		6.1
(-1.7) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182558_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13488
Sequence Type Exemplar sequence
Representative Public ID Y38H6A.3 NCBI
Target Description Y38H6A.3 /REP_DB=WormBase Gene ID /WP=CE20231 /TR=Q9XWU1 /GB=CAA21553.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075520(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075520 NCBI Caenorhabditis elegans Y38H6A.3 (Y38H6A.3) mRNA, complete cds. 11/11 None
SNAP00000031888 ENSEMBL cdna:SNAP chromosome:CEL140:V:20337182:20346178:1 10/11 None
GENEFINDER00000031893 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20343254:20346178:1 11/11 None
Y38H6A.3 ENSEMBL cdna:known chromosome:CEL140:V:20343254:20346178:1 gene:Y38H6A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20343253-20346178(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38H6A.3
Entrez Gene 180333 Entrez gene
SwissProt Q9XWU1 EMBL-EBI
WormBase CE20231 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21553 Hypothetical protein Y38H6A.3 [Caenorhabditis elegans] ref|NP_507921.1| Y38H6A.3 [Caenorhabditis elegans] 1.0E-87
blast CAA21553 Hypothetical protein Y38H6A.3 [Caenorhabditis elegans] ref|NP_507921.1| Y38H6A.3 [Caenorhabditis elegans] 1.0E-82
blast CAE61677 Hypothetical protein CBG05620 [Caenorhabditis briggsae] 4.0E-66
blast CAE61677 Hypothetical protein CBG05620 [Caenorhabditis briggsae] 3.0E-65
Sequence
Target Sequence 
>C. ELEGANS:182558_AT
aactgcgtacgggctgtatgccggaagaggatggggaaatcagaactatggaggcggtgg
aggtggacctcccaacgccggcgcgggctttggcagccctctacgctgcctgaacggtgg
cgcccacatcggacagtgccgtctggatcaggactcgatttgtattgcactcggaggagt
ttgtactcacggagcatgttgcacaacaccttttgttagtattctcggcagcttggggac
tactacggagacacctgaagtgatagatggggagacgacgaagaagaagaaggggaagag
gaagttggtcactacaacgacgactatggctcctggggatcgagagggagaggatattga
tgatgtgatgaaatcctctgaacttgaagaatggaacaaattagtggaaagagcaaggct
ggcaagtacaactactacagaagaaccctatattgaagagccaataattacagtatcacc
ttacgtggaagagaatgaggataggagatgctcttctgggctccgctccgtaggcccttg
ctccgaggattccgactgcccgacacttcatcaatgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGCGTACGGGCTGTATGCCGGA 126 143 147 Antisense
GACAGTGCCGTCTGGATCAGGACTC 208 365 278 Antisense
TCAGGACTCGATTTGTATTGCACTC 211 623 294 Antisense
GTACTCACGGAGCATGTTGCACAAC 584 459 329 Antisense
ACACCTTTTGTTAGTATTCTCGGCA 173 109 352 Antisense
TATTCTCGGCAGCTTGGGGACTACT 104 661 366 Antisense
TGGGGACTACTACGGAGACACCTGA 488 545 380 Antisense
CTATGGCTCCTGGGGATCGAGAGGG 419 213 470 Antisense
AGCAAGGCTGGCAAGTACAACTACT 564 75 558 Antisense
GGATAGGAGATGCTCTTCTGGGCTC 160 509 645 Antisense
ACTGCCCGACACTTCATCAATGTGA 257 99 701 Antisense
Sequence Source Affymetrix Proprietary Database