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[182556_at]

Description F41C6.4 /REP_DB=WormBase Gene ID /WP=CE04541 /TR=Q20269 /GB=AAA80445.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 1.1
(-3)
A 		44.2
(3)
A 		30.4
(1.1)
A 		22.3
(-0)
A 		43
B 17.7
(-3)
A 		41.5
(3)
A 		19.3
(-2.6)
A 		26
(-0.9)
A 		24
C 25.6
(-0.2)
A 		2.2
(-3)
A 		2.1
(-3)
A 		52.8
(3)
P 		51
avr 14.8
(-3) 		29.3
(1.6) 		17.3
(-2.2) 		33.7
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 7.5
(-2.4)
A 		43.1
(3)
A 		9.7
(-2.1)
A 		21.3
(-0.3)
A 		10.1
(-2)
A 		3.8
(-3)
A 		39
B 27.4
(3)
A 		11.7
(-0.8)
A 		8.1
(-1.6)
A 		3.6
(-2.7)
A 		22.3
(1.8)
A 		2.4
(-3)
A 		25
C 29.9
(1.1)
A 		42.3
(3)
P 		2.3
(-3)
A 		22.3
(0)
A 		6
(-2.4)
A 		18.4
(-0.6)
A 		40
avr 21.6
(0.5) 		32.4
(3) 		6.7
(-3) 		15.7
(-0.9) 		12.8
(-1.6) 		8.2
(-2.6) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.4
(-3)
A 		9.6
(3)
A 		8
(2)
A 		3.3
(-1.1)
A 		9
B 5.6
(-1.9)
A 		10.3
(3)
A 		4.5
(-3)
A 		5.5
(-2)
A 		6
C 8.5
(2.7)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		8.9
(3)
P 		8
avr 4.8
(-2) 		6.8
(3) 		4.4
(-3) 		5.9
(0.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.4
(-2.8)
A 		15.3
(3)
A 		2.1
(-2.5)
A 		5.4
(-1.1)
A 		3.1
(-2.1)
A 		0.9
(-3)
A 		14
B 9.5
(3)
A 		3.9
(-0.9)
A 		2
(-2.2)
A 		1
(-2.9)
A 		9.1
(2.7)
A 		0.9
(-3)
A 		9
C 11.1
(2.1)
A 		12.9
(3)
P 		0.6
(-3)
A 		4.5
(-1.1)
A 		1.9
(-2.4)
A 		6.2
(-0.3)
A 		12
avr 7.3
(0.8) 		10.7
(3) 		1.6
(-3) 		3.6
(-1.7) 		4.7
(-1) 		2.7
(-2.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182556_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16153
Sequence Type Exemplar sequence
Representative Public ID F41C6.4 NCBI
Target Description F41C6.4 /REP_DB=WormBase Gene ID /WP=CE04541 /TR=Q20269 /GB=AAA80445.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076760(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076760 NCBI Caenorhabditis elegans F41C6.4 (F41C6.4) mRNA, complete cds. 11/11 None
GENEFINDER00000012728 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6870518:6874767:-1 11/11 None
SNAP00000012722 ENSEMBL cdna:SNAP chromosome:CEL140:X:6873454:6874767:-1 11/11 None
F41C6.4 ENSEMBL cdna:known chromosome:CEL140:X:6873625:6874767:-1 gene:F41C6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6873624-6874767(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41C6.4
Entrez Gene 185599 Entrez gene
SwissProt Q20269 EMBL-EBI
WormBase CE04541 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80445 Hypothetical protein F41C6.4 [Caenorhabditis elegans] ref|NP_509161.1| F41C6.4 [Caenorhabditis elegans] 0.0
blast CAE65809 Hypothetical protein CBG10917 [Caenorhabditis briggsae] 1.0E-57
blast CAE65809 Hypothetical protein CBG10917 [Caenorhabditis briggsae] 9.0E-57
blast CAE65809 Hypothetical protein CBG10917 [Caenorhabditis briggsae] 1.0E-40
blast AAA80444 Hypothetical protein F41C6.3 [Caenorhabditis elegans] ref|NP_509160.1| F41C6.3 [Caenorhabditis elegans] 4.0E-39
blast CAE65805 Hypothetical protein CBG10913 [Caenorhabditis briggsae] 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:182556_AT
gtcgggctgaaaactgcttgctacgtcttggaggagattctaactgcacaagagcagcca
atgattttaagtcacgcgtcgccaagaaaactgattcatctcactatcaggaatatgttt
tgaaattgagagaaaacattgcgggatggaaaaacaaaaccagagccgtaaatatccttt
tggatggcaacttcaaagtcggagttgataatattaacagtttcttgatgaatatggttg
atgtgcttttgcaatggattcaggaaacaccttgggttaatgatcagaaaattaacagag
cgcttgaagcagttgcaagggacttattcgtgattgatgaatatggaattcaactgagag
agaatatagatgcgcttatgaaaaccgagcaagactttttgaaatgctctgcggattttt
caggaaaacatgacttgttttgttcaatatatagttaccattttatgtttaatggtagaa
caacaactgttcttcatttcggctacgatgcaacaaatagacatccatatatttattttg
gtatgcctttcatcgcacgtgccgcgaattcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGGCTGAAAACTGCTTGCTACG 85 473 407 Antisense
GCTTGCTACGTCTTGGAGGAGATTC 260 307 422 Antisense
GAGGAGATTCTAACTGCACAAGAGC 465 403 437 Antisense
AATGATTTTAAGTCACGCGTCGCCA 121 163 466 Antisense
AAGAAAACTGATTCATCTCACTATC 325 153 490 Antisense
AACCAGAGCCGTAAATATCCTTTTG 54 147 564 Antisense
GCAGTTGCAAGGGACTTATTCGTGA 319 309 715 Antisense
GATGCGCTTATGAAAACCGAGCAAG 418 415 775 Antisense
GTTCTTCATTTCGGCTACGATGCAA 667 443 895 Antisense
ATTTTGGTATGCCTTTCATCGCACG 429 13 941 Antisense
TCATCGCACGTGCCGCGAATTCAGA 508 619 956 Antisense
Sequence Source Affymetrix Proprietary Database