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[182555_at]

Description F08F3.1 /REP_DB=WormBase Gene ID /WP=CE09257 /TR=Q22951 /GB=AAB04878.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 70      6grp_total > 05      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 308
(3)
P 		125.1
(-2.9)
P 		123.2
(-3)
P 		197.3
(-0.6)
P 		185
B 273.8
(3)
P 		178.7
(-1)
P 		129.6
(-3)
P 		272.3
(2.9)
P 		144
C 297.7
(1.9)
P 		201.9
(-2.4)
P 		189.5
(-3)
P 		323.3
(3)
P 		134
avr 293.2
(3) 		168.6
(-2.1) 		147.4
(-3) 		264.3
(1.8) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 377.4
(3)
P 		234.6
(-0.2)
P 		258.4
(0.3)
P 		181
(-1.4)
P 		234.3
(-0.2)
P 		111.5
(-3)
P 		266
B 382.7
(3)
P 		335.7
(1.9)
P 		194.5
(-1.6)
P 		172.9
(-2.1)
P 		214.8
(-1.1)
P 		135.4
(-3)
P 		247
C 370.3
(3)
P 		357.6
(2.7)
P 		174.2
(-2.4)
P 		215.3
(-1.3)
P 		207.3
(-1.5)
P 		152.5
(-3)
P 		218
avr 376.8
(3) 		309.3
(1.3) 		209
(-1.1) 		189.7
(-1.6) 		218.8
(-0.9) 		133.1
(-3) 		244
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 112.1
(3)
P 		27.1
(-3)
P 		32.2
(-2.6)
P 		28.9
(-2.9)
P 		85
B 87.3
(3)
P 		44.1
(-1.5)
P 		30
(-3)
P 		58
(-0.1)
P 		57
C 98.5
(3)
P 		58
(-2.5)
P 		66.1
(-1.4)
P 		54.5
(-3)
P 		44
avr 99.3
(3) 		43.1
(-3) 		42.8
(-3) 		47.1
(-2.5) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 69.6
(1.5)
P 		83.4
(3)
P 		56.3
(0.1)
P 		45.9
(-1)
P 		70.7
(1.6)
P 		27.2
(-3)
P 		56
B 133.2
(3)
P 		111.7
(1.5)
P 		47.2
(-2.9)
P 		45.8
(-3)
P 		87.3
(-0.2)
P 		50.5
(-2.7)
P 		87
C 137.3
(3)
P 		109.1
(1.2)
P 		44.3
(-2.9)
P 		43.3
(-3)
P 		67.1
(-1.5)
P 		51.1
(-2.5)
P 		94
avr 113.4
(3) 		101.4
(2) 		49.3
(-2.5) 		45
(-2.8) 		75
(-0.3) 		42.9
(-3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182555_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11405
Sequence Type Exemplar sequence
Representative Public ID F08F3.1 NCBI
Target Description F08F3.1 /REP_DB=WormBase Gene ID /WP=CE09257 /TR=Q22951 /GB=AAB04878.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072039(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072039 NCBI Caenorhabditis elegans F08F3.1 (F08F3.1) mRNA, complete cds. 11/11 None
SNAP00000026687 ENSEMBL cdna:SNAP chromosome:CEL140:V:5445972:5447199:1 9/11 None
GENEFINDER00000026691 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5445966:5447199:1 9/11 None
F08F3.1 ENSEMBL cdna:known chromosome:CEL140:V:5446748:5447214:1 gene:F08F3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5446747-5447214(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08F3.1
Entrez Gene 184196 Entrez gene
SwissProt Q22951 EMBL-EBI
WormBase CE09257 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE64629 Hypothetical protein CBG09388 [Caenorhabditis briggsae] 6.0E-62
blast CAE64629 Hypothetical protein CBG09388 [Caenorhabditis briggsae] 2.0E-61
blast AAB04878 Hypothetical protein F08F3.1 [Caenorhabditis elegans] ref|NP_504440.1| F08F3.1 [Caenorhabditis elegans] 7.0E-54
blast AAB04878 Hypothetical protein F08F3.1 [Caenorhabditis elegans] ref|NP_504440.1| F08F3.1 [Caenorhabditis elegans] 6.0E-49
blast CAE64629 Hypothetical protein CBG09388 [Caenorhabditis briggsae] 5.0E-42
Sequence
Target Sequence 
>C. ELEGANS:182555_AT
atgttacctgttgtgttgtcagcaattcatccaccaatctttcacaaacgtgatgtacct
gtctttcacaacgaaacaactgtaacgccagaacgacccattgaaaagaaaaaacgtgta
cgacaaatacaaatttgtcacgatgtacgaaaattctcgtcgtgctttattcgtcccgga
tgctctgatcaacaagccgcaaatatcgcttcggttcaataccatatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTACCTGTTGTGTTGTCAGCAA 352 47 13 Antisense
GTTGTCAGCAATTCATCCACCAATC 559 437 27 Antisense
TCATCCACCAATCTTTCACAAACGT 515 619 39 Antisense
CACAAACGTGATGTACCTGTCTTTC 501 193 55 Antisense
GATGTACCTGTCTTTCACAACGAAA 40 409 64 Antisense
CTGTAACGCCAGAACGACCCATTGA 689 239 92 Antisense
TTTGTCACGATGTACGAAAATTCTC 135 659 146 Antisense
AAAATTCTCGTCGTGCTTTATTCGT 612 133 162 Antisense
GATGCTCTGATCAACAAGCCGCAAA 393 413 191 Antisense
AAGCCGCAAATATCGCTTCGGTTCA 585 149 206 Antisense
ATCGCTTCGGTTCAATACCATATGG 14 37 217 Antisense
Sequence Source Affymetrix Proprietary Database