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[182551_s_at]

Description T10B10.6 /REP_DB=WormBase Gene ID /WP=CE06404 /TR=Q22373 /GB=CAA96678.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 13      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 41      6grp_total > 13      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1512
1 2 3 4 range
A 1458.5
(3)
P 		1150.6
(1.6)
P 		693.3
(-0.5)
P 		150.4
(-3)
P 		1308
B 1604.9
(3)
P 		903.9
(0.2)
P 		749.5
(-0.4)
P 		93.4
(-3)
P 		1512
C 1536.4
(3)
P 		754.4
(-0.4)
P 		607.9
(-1)
P 		139
(-3)
P 		1397
avr 1533.3
(3) 		936.3
(0.5) 		683.6
(-0.6) 		127.6
(-3) 		1406

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 730
1 2 3 4 5 6 range
A 1045.6
(3)
P 		895.4
(1.7)
P 		759.6
(0.6)
P 		699.4
(0.1)
P 		503
(-1.6)
P 		337.4
(-3)
P 		708
B 802.4
(1.8)
P 		917.6
(3)
P 		645.3
(0.1)
P 		634.1
(-0)
P 		640.3
(0.1)
P 		352.1
(-3)
P 		566
C 1027.6
(3)
P 		801.5
(1.1)
P 		795.9
(1)
P 		684.7
(0.1)
P 		570.5
(-0.9)
P 		315.4
(-3)
P 		712
avr 958.5
(3) 		871.5
(2.2) 		733.6
(0.8) 		672.7
(0.2) 		571.3
(-0.7) 		335
(-3) 		624
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 511
1 2 3 4 range
A 531
(3)
P 		249.8
(-0.3)
P 		181.3
(-1.1)
P 		22
(-3)
P 		509
B 511.8
(3)
P 		223.2
(-0.5)
P 		173.7
(-1.1)
P 		19.9
(-3)
P 		492
C 508.6
(3)
P 		216.9
(-0.6)
P 		211.9
(-0.7)
P 		23.4
(-3)
P 		485
avr 517.1
(3) 		230
(-0.5) 		189
(-1) 		21.8
(-3) 		495

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 192.8
(-0.2)
P 		318.5
(3)
P 		165.4
(-0.9)
P 		177.4
(-0.6)
P 		151.8
(-1.2)
P 		82.1
(-3)
P 		236
B 279.2
(2.1)
P 		305.4
(3)
P 		156.7
(-2.1)
P 		168
(-1.7)
P 		260.1
(1.4)
P 		131.3
(-3)
P 		174
C 380.9
(3)
P 		244.6
(0)
P 		202.6
(-0.9)
P 		137.7
(-2.3)
P 		184.6
(-1.3)
P 		105.6
(-3)
P 		275
avr 284.3
(2.8) 		289.5
(3) 		174.9
(-0.8) 		161
(-1.2) 		198.8
(0) 		106.3
(-3) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182551_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17347
Sequence Type Exemplar sequence
Representative Public ID T10B10.6 NCBI
Target Description T10B10.6 /REP_DB=WormBase Gene ID /WP=CE06404 /TR=Q22373 /GB=CAA96678.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078124(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078124 NCBI Caenorhabditis elegans T10B10.6 (T10B10.6) mRNA, complete cds. 11/11 None
SNAP00000009615 ENSEMBL cdna:SNAP chromosome:CEL140:X:15193122:15194230:-1 11/11 None
T10B10.6 ENSEMBL cdna:known chromosome:CEL140:X:15193092:15194230:-1 gene:T10B10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009617 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15193121-15194230(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B10.6
Entrez Gene 181614 Entrez gene
SwissProt Q22373 EMBL-EBI
WormBase CE06404 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96678 Hypothetical protein T10B10.6 [Caenorhabditis elegans] ref|NP_510525.1| T10B10.6 [Caenorhabditis elegans] 5.0E-86
blast CAA96678 Hypothetical protein T10B10.6 [Caenorhabditis elegans] ref|NP_510525.1| T10B10.6 [Caenorhabditis elegans] 2.0E-79
blast CAE63286 Hypothetical protein CBG07666 [Caenorhabditis briggsae] 4.0E-67
blast CAE63286 Hypothetical protein CBG07666 [Caenorhabditis briggsae] 8.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 0.62
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.1E-4
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.1E-4
Sequence
Target Sequence 
>C. ELEGANS:182551_S_AT
ttctcttccttgttttcactgtaggagaagctgctgaagattgtgtcgatttgttgtcta
catgtgaaagtctgcagtccatctgtattgggagcgttttggagtatcactttaatgtta
tcagcgatctctcgaaacagttgaatagctcatcacttcctgcacttgaaacttctttgc
cactgatccaatccggtcttccacttgttttaggctcaaacggaggagatgagggatctg
ccgaaggatctgctgttgagggatctggctcgtcatcttcttcctcagttttcgatgagc
agaacctcaaaaatgctcttccactactcaaagagtcccttccattgatccgtgaatctc
tgccacttataagagagtcacttccgttgattagacaatatttagatccactggtgggaa
aatcttattgccaacgaaaagcgacgtgccgaagctgcaaggattgcccaaaactgcgtg
actccatagtcgactttgtccaggctttatgcccgagaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCTTCCTTGTTTTCACTGTAGG 684 691 38 Antisense
GAAAGTCTGCAGTCCATCTGTATTG 294 361 103 Antisense
AGTTGAATAGCTCATCACTTCCTGC 318 65 176 Antisense
ACTTGAAACTTCTTTGCCACTGATC 56 103 201 Antisense
GTCTTCCACTTGTTTTAGGCTCAAA 699 465 233 Antisense
TCTGCCGAAGGATCTGCTGTTGAGG 244 609 274 Antisense
TGTTGAGGGATCTGGCTCGTCATCT 111 563 291 Antisense
CATTGATCCGTGAATCTCTGCCACT 6 217 380 Antisense
GGATTGCCCAAAACTGCGTGACTCC 11 509 498 Antisense
GACTCCATAGTCGACTTTGTCCAGG 282 375 517 Antisense
GTCCAGGCTTTATGCCCGAGAACTT 80 475 535 Antisense
Sequence Source Affymetrix Proprietary Database