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[182550_at]

Description F52C9.1 /REP_DB=WormBase Gene ID /WP=CE02759 /TR=Q20651 /GB=AAA81062.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 46      4grp_high_8_8 > 11      6grp_highest_nonorm > 90      6grp_total > 35      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 293.1
(0)
P 		157
(-2.9)
P 		150.7
(-3)
P 		433.5
(3)
P 		283
B 289.2
(1.6)
P 		155.7
(-1.9)
P 		114.2
(-3)
P 		343.8
(3)
P 		230
C 285.9
(1.2)
P 		162.5
(-2.1)
P 		128
(-3)
P 		354.4
(3)
P 		226
avr 289.4
(0.9) 		158.4
(-2.3) 		131
(-3) 		377.2
(3) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 139.2
(0.2)
P 		173.9
(3)
P 		161
(2)
P 		148
(0.9)
P 		99.6
(-3)
P 		155.7
(1.5)
P 		74
B 181
(3)
P 		132.3
(-1)
P 		150.1
(0.5)
P 		117
(-2.2)
P 		107.3
(-3)
P 		136.2
(-0.6)
P 		74
C 149.9
(-0.4)
P 		169.9
(1.4)
P 		121.1
(-3)
P 		188.3
(3)
P 		132.1
(-2)
P 		137
(-1.6)
P 		67
avr 156.7
(2.7) 		158.7
(3) 		144.1
(1.1) 		151.1
(2) 		113
(-3) 		143
(0.9) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 106.7
(3)
P 		34.1
(-3)
P 		39.4
(-2.6)
P 		63.5
(-0.6)
P 		73
B 92.2
(3)
P 		38.5
(-1.9)
P 		26.5
(-3)
P 		73.3
(1.3)
P 		66
C 94.7
(3)
P 		46.7
(-2.7)
P 		44.6
(-3)
P 		59.8
(-1.2)
P 		50
avr 97.9
(3) 		39.8
(-2.7) 		36.8
(-3) 		65.5
(-0.2) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 25.7
(-3)
P 		61.8
(3)
P 		35.1
(-1.4)
P 		37.5
(-1)
P 		30.1
(-2.3)
P 		37.9
(-1)
P 		36
B 63
(3)
P 		44
(-0.6)
P 		36.5
(-2)
P 		31
(-3)
P 		43.6
(-0.6)
P 		50.8
(0.7)
P 		32
C 55.6
(3)
P 		51.8
(2.1)
P 		30.8
(-3)
P 		37.9
(-1.3)
P 		42.8
(-0.1)
P 		45.9
(0.7)
P 		25
avr 48.1
(1.6) 		52.5
(3) 		34.1
(-3) 		35.5
(-2.5) 		38.8
(-1.5) 		44.9
(0.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182550_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6942
Sequence Type Exemplar sequence
Representative Public ID F52C9.1 NCBI
Target Description F52C9.1 /REP_DB=WormBase Gene ID /WP=CE02759 /TR=Q20651 /GB=AAA81062.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065739(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065739 NCBI Caenorhabditis elegans F52C9.1a (F52C9.1) mRNA, complete cds. 10/11 None
GENEFINDER00000014758 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5326588:5333280:1 9/11 None
SNAP00000014755 ENSEMBL cdna:SNAP chromosome:CEL140:III:5329305:5333499:1 10/11 None
F52C9.1a ENSEMBL cdna:known chromosome:CEL140:III:5329480:5333569:1 gene:F52C9.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_181948 8/11 Cross Hyb Matching Probes None
F52C9.1b 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565037 2 1 NM_065739 182550_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5329478-5333498(+) 100.0 100.0
Public Domain and Genome References
Ensembl F52C9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498140 F52C9.1a [Caenorhabditis elegans] 0.0
blast AAZ32806 Hypothetical protein F52C9.1a [Caenorhabditis elegans] 0.0
blast NP_871677 F52C9.1b [Caenorhabditis elegans] 0.0
blast AAZ32807 Hypothetical protein F52C9.1b [Caenorhabditis elegans] 0.0
blast CAE56849 Hypothetical protein CBG24676 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000409 EMBL-EBI Beige/BEACH domain 0.0010
Pfam IPR000409 EMBL-EBI Beige/BEACH domain 1.4E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.4E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.55
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.4E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.55
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.4E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.55
Sequence
Target Sequence 
>C. ELEGANS:182550_AT
tacacgacatcacaatcctggctgataactcgattgcatccaccgacggtgttcttcatg
tttgggatccgttcagaacgacgcttctcgctcaaatggaatgggactccaaggagggta
gtggtgggaacataatgcgtgtggagaacgtagatcggcacattctctcggcaatttgca
gtcttcattcgacggtcaagctgtttgatagtcgagttggtggatggacatgcgagttga
aagtttcacctggtcctggattaacaagagcaattactgtcagagataaaggtaataaaa
tggcagtcgccctatccaacggaactctcgcgattcttgatgcccgaaatggaaagatca
acgcgctggcgcaaacgaattccacgcacaccgtctcggtcaattggctcagatccagta
agcgcagcttgcttacggacaactcattggtaacgctgcaaaatgggaccattctcagag
tataccgaaacagtggtgaacttcaaatcgagacgaaaatccgtccggatgagcttccgg
gtaccccgactgctgtgttaccccttccactcaattgctcctatctgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACACGACATCACAATCCTGGCTGA 429 643 1778 Antisense
GGCTGATAACTCGATTGCATCCACC 582 539 1797 Antisense
GGTGTTCTTCATGTTTGGGATCCGT 243 501 1825 Antisense
TCGGCAATTTGCAGTCTTCATTCGA 620 605 1945 Antisense
AGTTTCACCTGGTCCTGGATTAACA 407 61 2019 Antisense
TAAAATGGCAGTCGCCCTATCCAAC 709 639 2073 Antisense
TCTCGCGATTCTTGATGCCCGAAAT 445 607 2103 Antisense
GCGCTGGCGCAAACGAATTCCACGC 561 287 2140 Antisense
CGTCTCGGTCAATTGGCTCAGATCC 533 245 2169 Antisense
GCAGCTTGCTTACGGACAACTCATT 11 315 2201 Antisense
TCCACTCAATTGCTCCTATCTGATA 415 589 2343 Antisense
Sequence Source Affymetrix Proprietary Database