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[182549_at]

Description Y15E3A.2 /REP_DB=WormBase Gene ID /WP=CE21369 /TR=Q9U2R5 /GB=CAB60330.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 153.4
(3)
P 		93.2
(-2)
A 		81.6
(-3)
A 		139.9
(1.9)
A 		72
B 130.4
(3)
P 		122.7
(2.2)
A 		71.9
(-3)
A 		97.2
(-0.4)
P 		59
C 160.4
(3)
P 		117.1
(0.4)
A 		60.2
(-3)
A 		98.4
(-0.7)
P 		100
avr 148.1
(3) 		111
(0.1) 		71.2
(-3) 		111.8
(0.2) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 126.8
(3)
P 		80
(-1)
A 		94.9
(0.3)
A 		56.1
(-3)
A 		76.9
(-1.2)
P 		78.9
(-1.1)
A 		71
B 113.1
(3)
P 		71.1
(-1.7)
A 		87.8
(0.2)
A 		64.5
(-2.4)
A 		63.3
(-2.6)
A 		59.4
(-3)
A 		54
C 94.8
(2.1)
P 		105.5
(3)
P 		62.9
(-0.7)
A 		35.6
(-3)
A 		72.9
(0.2)
A 		54
(-1.4)
A 		70
avr 111.6
(3) 		85.5
(0.4) 		81.9
(0) 		52.1
(-3) 		71
(-1.1) 		64.1
(-1.8) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 55.9
(3)
P 		20.2
(-3)
A 		21.3
(-2.8)
A 		20.5
(-2.9)
A 		36
B 41.6
(3)
P 		30.3
(0.3)
A 		16.6
(-3)
A 		20.7
(-2)
P 		25
C 53.1
(3)
P 		33.7
(-0.2)
A 		21
(-2.3)
A 		16.6
(-3)
P 		37
avr 50.2
(3) 		28.1
(-1.3) 		19.6
(-2.9) 		19.3
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 23.4
(0.9)
P 		28.5
(3)
A 		20.7
(-0.3)
A 		14.2
(-3)
A 		23.2
(0.8)
P 		19.2
(-0.9)
A 		14
B 39.3
(3)
P 		23.7
(-1.2)
A 		21.3
(-1.9)
A 		17.1
(-3)
A 		25.7
(-0.7)
A 		22.2
(-1.6)
A 		22
C 35.1
(3)
P 		32.2
(2.4)
P 		16
(-1.1)
A 		7.2
(-3)
A 		23.6
(0.5)
A 		18.1
(-0.7)
A 		28
avr 32.6
(3) 		28.1
(1.6) 		19.3
(-1) 		12.8
(-3) 		24.2
(0.5) 		19.8
(-0.9) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182549_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17870
Sequence Type Exemplar sequence
Representative Public ID Y15E3A.2 NCBI
Target Description Y15E3A.2 /REP_DB=WormBase Gene ID /WP=CE21369 /TR=Q9U2R5 /GB=CAB60330.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078136(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078136 NCBI Caenorhabditis elegans Y15E3A.2 (Y15E3A.2) mRNA, complete cds. 11/11 None
SNAP00000023752 ENSEMBL cdna:SNAP chromosome:CEL140:X:15314901:15316290:-1 9/11 None
GENEFINDER00000023761 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15314901:15317135:-1 11/11 None
Y15E3A.2 ENSEMBL cdna:known chromosome:CEL140:X:15314901:15317135:-1 gene:Y15E3A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15314900-15317135(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y15E3A.2
Entrez Gene 189438 Entrez gene
SwissProt Q9U2R5 EMBL-EBI
WormBase CE21369 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60330 Hypothetical protein Y15E3A.2 [Caenorhabditis elegans] ref|NP_510537.1| Y15E3A.2 [Caenorhabditis elegans] 1.0E-125
blast CAB60330 Hypothetical protein Y15E3A.2 [Caenorhabditis elegans] ref|NP_510537.1| Y15E3A.2 [Caenorhabditis elegans] 1.0E-100
blast CAE63297 Hypothetical protein CBG07681 [Caenorhabditis briggsae] 4.0E-71
blast CAE63297 Hypothetical protein CBG07681 [Caenorhabditis briggsae] 6.0E-58
Sequence
Target Sequence 
>C. ELEGANS:182549_AT
tttccccaatatctctcgacgaggaccagcgctgcatgagtctgtcacgtctttcttcaa
accatctcggagctccaaaaccactgcgtcggtgccgtagtgcttcaccagcaacctgca
gagatctgacaatcagtccagagcatcagaaactgatcaagcgatcttggaatcgaattc
ccaaagcacagttcggtcgtgcttcgcttgaagcattcatcactgctgctcaagtgacac
acgcaattttcgtggacaaggaaacagagaatcgccatgtcaaatactttgtcgacttgg
tccaatcatgtgtggacaacctggagaacctggagaccggcgtcaaaccttggctggact
tgattggtcgaggacacgcgaactttaagatcactggaaaacattgggaaaaatttggcg
aaagcttgctaaccaccgccaccgaatggaatggtccggggcgtcgtcataaagaaacgg
tgaaggcatggatggtgatgtcttcatttctagcagaccgtcttgctcatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCCCAATATCTCTCGACGAGGA 45 671 50 Antisense
CTTTCTTCAAACCATCTCGGAGCTC 417 223 100 Antisense
TTCACCAGCAACCTGCAGAGATCTG 527 687 153 Antisense
AATTCCCAAAGCACAGTTCGGTCGT 593 171 225 Antisense
TTGAAGCATTCATCACTGCTGCTCA 408 705 257 Antisense
ACTGCTGCTCAAGTGACACACGCAA 691 97 271 Antisense
TACTTTGTCGACTTGGTCCAATCAT 619 645 334 Antisense
CAACCTGGAGAACCTGGAGACCGGC 324 147 366 Antisense
GGCGAAAGCTTGCTAACCACCGCCA 106 543 466 Antisense
CCACCGCCACCGAATGGAATGGTCC 425 273 482 Antisense
TTCTAGCAGACCGTCTTGCTCATGC 332 691 557 Antisense
Sequence Source Affymetrix Proprietary Database