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[182548_s_at]

Description F58G11.3 /REP_DB=WormBase Gene ID /WP=CE11404 /TR=P90898 /GB=CAB03154.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 95.4
(-3)
M 		99.9
(-2.7)
A 		156.3
(1.5)
M 		177.1
(3)
P 		82
B 70
(-3)
A 		108.3
(-0.3)
M 		73.9
(-2.7)
A 		155.4
(3)
P 		85
C 68.3
(-3)
A 		110.8
(-1.1)
M 		109.8
(-1.1)
P 		202.4
(3)
P 		134
avr 77.9
(-3) 		106.3
(-1.3) 		113.3
(-0.9) 		178.3
(3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 69.7
(-3)
A 		89.4
(-2.7)
A 		108.9
(-2.4)
P 		105.1
(-2.4)
P 		322.8
(1.1)
P 		437.5
(3)
P 		368
B 84.2
(-2.8)
A 		71.2
(-3)
A 		96
(-2.6)
A 		152.5
(-1.8)
P 		321.4
(0.8)
P 		470.8
(3)
P 		400
C 57
(-3)
P 		84.6
(-2.6)
A 		150.5
(-1.7)
M 		222.3
(-0.7)
P 		268.2
(-0.1)
P 		493.6
(3)
P 		437
avr 70.3
(-3) 		81.7
(-2.8) 		118.5
(-2.3) 		160
(-1.6) 		304.1
(0.5) 		467.3
(3) 		397
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 34.7
(1.1)
M 		21.7
(-3)
A 		40.9
(3)
M 		25.9
(-1.7)
P 		19
B 22.3
(-1.1)
A 		26.7
(0.6)
M 		17.1
(-3)
A 		33.1
(3)
P 		16
C 22.6
(-3)
A 		31.9
(0.6)
M 		38.3
(3)
P 		34.1
(1.4)
P 		16
avr 26.5
(-3) 		26.8
(-2.7) 		32.1
(3) 		31
(1.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 12.8
(-3)
A 		31.8
(-1.8)
A 		23.7
(-2.3)
P 		26.7
(-2.1)
P 		97.4
(2.4)
P 		106.5
(3)
P 		94
B 29.3
(-2.8)
A 		23.7
(-3)
A 		23.3
(-3)
A 		40.4
(-2.3)
P 		130.6
(1.2)
P 		175.6
(3)
P 		152
C 21.1
(-3)
P 		25.8
(-2.8)
A 		38.3
(-2.3)
M 		44.7
(-2)
P 		86.8
(-0.3)
P 		165.2
(3)
P 		144
avr 21.1
(-3) 		27.1
(-2.7) 		28.4
(-2.7) 		37.3
(-2.2) 		104.9
(0.9) 		149.1
(3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182548_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13468
Sequence Type Exemplar sequence
Representative Public ID F58G11.3 NCBI
Target Description F58G11.3 /REP_DB=WormBase Gene ID /WP=CE11404 /TR=P90898 /GB=CAB03154.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073983(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073983 NCBI Caenorhabditis elegans F58G11.3 (F58G11.3) mRNA, complete cds. 11/11 None
SNAP00000001241 ENSEMBL cdna:SNAP chromosome:CEL140:V:13668478:13674533:-1 9/11 None
GENEFINDER00000001249 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13672203:13674497:-1 11/11 None
F58G11.3 ENSEMBL cdna:known chromosome:CEL140:V:13671959:13674539:-1 gene:F58G11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13672202-13674533(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58G11.3
Entrez Gene 179856 Entrez gene
SwissProt P90898 EMBL-EBI
WormBase CE11404 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03154 Hypothetical protein F58G11.3 [Caenorhabditis elegans] ref|NP_506384.1| F58G11.3 [Caenorhabditis elegans] 0.0
blast CAE71129 Hypothetical protein CBG17983 [Caenorhabditis briggsae] 2.0E-69
blast CAE71129 Hypothetical protein CBG17983 [Caenorhabditis briggsae] 2.0E-68
blast CAE71129 Hypothetical protein CBG17983 [Caenorhabditis briggsae] 8.0E-65
blast CAA86317 Hypothetical protein C38D4.4 [Caenorhabditis elegans] ref|NP_497988.1| C38D4.4 [Caenorhabditis elegans] 2.0E-63
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000001241 1 632-654
Sequence
Target Sequence 
>C. ELEGANS:182548_S_AT
atgcatcgctgaaagcttttccacaaatgattgatgcacgtgcgaaagctctgatgcaac
aaaatcttgaagtccaaagaaatatggcaagccgtgccagcttaaatgttgttgctcaag
tgcagcgcccaagttcatcaatcaaccttcaacgtgtcagggtaaatcctaatcaatgtg
tcaagaaagtggttccagttagaacccttggacaggctctcgctgaagttaggagacaac
gagaacaggtagagcaagaagctttcaatgagcagccagaaccttcaccttcacctcgtc
tcggcatgggctcttcttcgcatgcagccagcaatgtttcagatgatggctggggtgctc
aagtcgttcagaaagtcgagaagagtccacccaaaccgtttaccgtcttgctgccaccaa
tgtcaaaaggagcgggtgtgaaaatacggcctcgttctcgtgttgtattatgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCATCGCTGAAAGCTTTTCCACA 569 43 1472 Antisense
GATGCACGTGCGAAAGCTCTGATGC 465 413 1504 Antisense
GCCGTGCCAGCTTAAATGTTGTTGC 598 283 1562 Antisense
ATGTTGTTGCTCAAGTGCAGCGCCC 155 47 1577 Antisense
CGCCCAAGTTCATCAATCAACCTTC 356 255 1597 Antisense
CTTGGACAGGCTCTCGCTGAAGTTA 661 211 1678 Antisense
TCAATGAGCAGCCAGAACCTTCACC 39 633 1736 Antisense
CTTCTTCGCATGCAGCCAGCAATGT 210 221 1784 Antisense
GCTGGGGTGCTCAAGTCGTTCAGAA 216 295 1820 Antisense
GCGGGTGTGAAAATACGGCCTCGTT 281 285 1903 Antisense
CCTCGTTCTCGTGTTGTATTATGCC 556 267 1921 Antisense
Sequence Source Affymetrix Proprietary Database