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[182547_at] 7TM chemoreceptor, srx family

Description R05D8.5 /REP_DB=WormBase Gene ID /WP=CE23897 /TR=Q9N5G6 /GB=AAF39952.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 12      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 28.6
(-0.5)
A 		17.1
(-2)
A 		8.9
(-3)
A 		56.3
(3)
A 		47
B 22.1
(-1)
A 		8.8
(-2.5)
A 		4.8
(-3)
A 		55.8
(3)
A 		51
C 18.9
(-1.9)
A 		32.8
(-0.5)
A 		8.8
(-3)
A 		65.6
(3)
P 		57
avr 23.2
(-1.2) 		19.6
(-1.6) 		7.5
(-3) 		59.2
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 8.9
(-2.1)
A 		14.9
(-1.2)
A 		12.2
(-1.6)
A 		3
(-3)
A 		11.6
(-1.7)
A 		41.6
(3)
A 		39
B 43.8
(3)
A 		36.1
(1.7)
A 		30.1
(0.6)
A 		9.3
(-3)
A 		10.2
(-2.8)
A 		17.5
(-1.6)
A 		35
C 19.8
(-1.7)
A 		67.6
(3)
A 		26.3
(-1)
A 		28.1
(-0.9)
A 		13.6
(-2.3)
A 		6.3
(-3)
A 		61
avr 24.2
(-0.3) 		39.5
(3) 		22.9
(-0.6) 		13.5
(-2.6) 		11.8
(-3) 		21.8
(-0.8) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.4
(3)
A 		3.7
(-2)
A 		2.3
(-3)
A 		8.2
(1.4)
A 		8
B 7
(0.3)
A 		2.2
(-2.4)
A 		1.1
(-3)
A 		11.9
(3)
A 		11
C 6.3
(-0.6)
A 		9.4
(1.7)
A 		3.1
(-3)
A 		11.1
(3)
P 		8
avr 7.9
(1.2) 		5.1
(-0.9) 		2.2
(-3) 		10.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.6
(-2.4)
A 		5.3
(-0.1)
A 		2.7
(-1.7)
A 		0.7
(-3)
A 		3.5
(-1.2)
A 		10.1
(3)
A 		9
B 15.3
(3)
A 		12
(1.5)
A 		7.3
(-0.8)
A 		2.5
(-3)
A 		4.2
(-2.2)
A 		6.5
(-1.1)
A 		13
C 7.3
(-1.3)
A 		20.6
(3)
A 		6.7
(-1.5)
A 		5.7
(-1.8)
A 		4.4
(-2.3)
A 		2.1
(-3)
A 		19
avr 8.1
(0.2) 		12.6
(3) 		5.6
(-1.4) 		3
(-3) 		4
(-2.4) 		6.2
(-1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182547_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15207
Sequence Type Exemplar sequence
Representative Public ID R05D8.5 NCBI
Target Description R05D8.5 /REP_DB=WormBase Gene ID /WP=CE23897 /TR=Q9N5G6 /GB=AAF39952.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071348 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-28) (srx-28) mRNA, complete cds. 11/11 None
GENEFINDER00000009145 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2755528:2756922:-1 11/11 None
R05D8.5 ENSEMBL cdna:known chromosome:CEL140:V:2755581:2757103:-1 gene:R05D8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2756129-2757103(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-28
Ensembl R05D8.5
Entrez Gene 187606 Entrez gene
SwissProt Q9N5G6 EMBL-EBI
WormBase CE36556 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503749 Serpentine Receptor, class X family member (srx-28) [Caenorhabditis elegans] gb|AAF39952.2| Serpentine receptor, class x protein 28 [Caenorhabditis elegans] 1.0E-167
blast NP_503749 Serpentine Receptor, class X family member (srx-28) [Caenorhabditis elegans] gb|AAF39952.2| Serpentine receptor, class x protein 28 [Caenorhabditis elegans] 1.0E-136
blast NP_503333 Serpentine Receptor, class X family member (srx-32) [Caenorhabditis elegans] gb|AAB69948.3| Serpentine receptor, class x protein 32 [Caenorhabditis elegans] 4.0E-76
blast AAK84528 Serpentine receptor, class x protein 31 [Caenorhabditis elegans] ref|NP_001023913.1| Serpentine Receptor, class X family member (srx-31) [Caenorhabditis elegans] 6.0E-76
blast NP_503333 Serpentine Receptor, class X family member (srx-32) [Caenorhabditis elegans] gb|AAB69948.3| Serpentine receptor, class x protein 32 [Caenorhabditis elegans] 6.0E-68
blast AAK84528 Serpentine receptor, class x protein 31 [Caenorhabditis elegans] ref|NP_001023913.1| Serpentine Receptor, class X family member (srx-31) [Caenorhabditis elegans] 5.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503749.2 7 5-27,47-69,73-95,127-149,169-191,225-242,247-269
R05D8.5 7 5-27,47-69,73-95,127-149,169-191,225-242,247-269
GENEFINDER00000009145 6 13-35,39-61,93-115,135-157,191-208,213-235
Sequence
Target Sequence 
>C. ELEGANS:182547_AT
atattttgtttgtgcttcctctgcagttgagttccctatcccattttataccaatctctc
attattttggaaccgctgctcagactgtctacataatttccaatttatctcatttcctta
acgcgctcaataggtgctgtgcactatttatgccgctatggtatactcatatttttagta
actcaaaaaccgttttctatcgtaactttatatggattttttcgataatattctgtatta
cactctatgaatttttcaagtgctttttattatatgccccgaaatcttggagttttcaat
ttgtacaaaacccagtttgcaatcaaataacttggtatttagattttaatttcaattgtt
caatcataattataacacttattatcgaccttttggttgccttcgttggaagaaaacatt
caaagacactccctgttggatccgaatattcgaaagttcttcggaaacgggattggaatt
ttgtgaggcaaacttcttcgcaaggttttaataattttgtgggtgtactcgcgttttata
ttgtggcgcctcgtattagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTTTGTTTGTGCTTCCTCTGCA 578 19 182 Antisense
TTGTGCTTCCTCTGCAGTTGAGTTC 569 703 191 Antisense
TAACGCGCTCAATAGGTGCTGTGCA 357 639 300 Antisense
GGTGCTGTGCACTATTTATGCCGCT 520 501 314 Antisense
TATGCCGCTATGGTATACTCATATT 499 657 330 Antisense
AGTGCTTTTTATTATATGCCCCGAA 360 59 440 Antisense
ATTATCGACCTTTTGGTTGCCTTCG 441 13 562 Antisense
TCAAAGACACTCCCTGTTGGATCCG 596 627 601 Antisense
GTGAGGCAAACTTCTTCGCAAGGTT 601 481 664 Antisense
TTGTGGGTGTACTCGCGTTTTATAT 203 707 698 Antisense
TTATATTGTGGCGCCTCGTATTAGC 449 675 717 Antisense
Sequence Source Affymetrix Proprietary Database