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[182544_at]

Description C10E2.1 /REP_DB=WormBase Gene ID /WP=CE08060 /TR=O17327 /GB=AAB71241.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 0      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 10.3
(-2)
A 		2.6
(-3)
A 		2.6
(-3)
A 		49.9
(3)
A 		47
B 1.8
(-3)
A 		5.3
(-2.6)
A 		15.1
(-1.4)
A 		52.4
(3)
A 		51
C 2.2
(-2.9)
A 		1.8
(-3)
A 		29.2
(1.2)
A 		41
(3)
A 		39
avr 4.8
(-2.8) 		3.2
(-3) 		15.6
(-1.3) 		47.8
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 1.8
(-3)
A 		31.5
(1.1)
A 		21.2
(-0.3)
A 		45
(3)
A 		18.3
(-0.7)
A 		9.2
(-2)
A 		43
B 2.8
(-3)
A 		8.9
(-1.2)
A 		23.9
(3)
A 		3.8
(-2.7)
A 		2.7
(-3)
A 		11.3
(-0.6)
A 		21
C 2.8
(-3)
A 		10.2
(-1.7)
A 		28.6
(1.4)
A 		6.6
(-2.3)
A 		37.7
(3)
A 		29.7
(1.6)
A 		35
avr 2.5
(-3) 		16.9
(0.9) 		24.6
(3) 		18.5
(1.3) 		19.6
(1.6) 		16.7
(0.9) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.7
(-0.2)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		7.3
(3)
A 		7
B 0.6
(-3)
A 		1.3
(-2.6)
A 		3.5
(-1.4)
A 		11.2
(3)
A 		11
C 0.7
(-2.9)
A 		0.5
(-3)
A 		10.2
(3)
A 		6.9
(1)
A 		10
avr 1.7
(-2.3) 		0.8
(-3) 		4.8
(0.1) 		8.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.3
(-3)
A 		11.2
(2.9)
A 		4.6
(-0.7)
A 		11.4
(3)
A 		5.5
(-0.2)
A 		2.2
(-2)
A 		11
B 1
(-3)
A 		3
(-0.5)
A 		5.8
(3)
A 		1
(-3)
A 		1.1
(-2.9)
A 		4.2
(1)
A 		5
C 1
(-3)
A 		3.1
(-1.9)
A 		7.3
(0.4)
A 		1.3
(-2.8)
A 		12.2
(3)
A 		9.9
(1.8)
A 		11
avr 0.8
(-3) 		5.8
(2.5) 		5.9
(2.6) 		4.6
(1.1) 		6.3
(3) 		5.4
(2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182544_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17754
Sequence Type Exemplar sequence
Representative Public ID C10E2.1 NCBI
Target Description C10E2.1 /REP_DB=WormBase Gene ID /WP=CE08060 /TR=O17327 /GB=AAB71241.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078303
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000026947 ENSEMBL cdna:SNAP chromosome:CEL140:X:16763622:16766569:1 9/11 None
GENEFINDER00000026950 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16763622:16766569:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078303 7/11 Cross Hyb Matching Probes None
C10E2.1 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16763621-16766569(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71241 Hypothetical protein C10E2.1 [Caenorhabditis elegans] ref|NP_510704.2| C10E2.1 [Caenorhabditis elegans] 1.0E-108
blast CAE69893 Hypothetical protein CBG16243 [Caenorhabditis briggsae] 1.0E-30
Sequence
Target Sequence 
>C. ELEGANS:182544_AT
tcggagcaagtcgtacggcttttgaatggtgttaaaattttcaaaagcttgacggttaat
gtgaatatcagccatcgttccatggtatacttggagcggttaaaaacgattattgacgga
aataaaagtacctcgatattcattttcagagagctccgatatcttgaaaaaatgcacatt
ctaaccaatgacggagtgcacttgcgacgttcggatggtgcattgatgactatgtatctc
aaaacaaaatctttaatctcacaggagcatactttcataatacacgcagagtatccatgg
aactcgccaatgataaatcacattgacaagaccatagagacgtatgcgtcaaaaaaagaa
accttgaagactctgaaatcaaatctaaaagtagcaacaaatgaagagcagaagtgtttc
aagaaatggcacaatgagaaagatcgtgctgaacttctcaaagcaaaaagagcattgcat
gagagcaagattgggaaagtaaagatcgcatttgagatgaatgattatcaacatcaaatc
aatcacatggatttcttgaaggagatgtgtctggccacccaagcaaggaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGAGCAAGTCGTACGGCTTTTGA 237 607 559 Antisense
GAATATCAGCCATCGTTCCATGGTA 653 323 621 Antisense
AAGTACCTCGATATTCATTTTCAGA 357 155 684 Antisense
TTTTCAGAGAGCTCCGATATCTTGA 710 673 701 Antisense
ACCAATGACGGAGTGCACTTGCGAC 313 83 742 Antisense
CACTTGCGACGTTCGGATGGTGCAT 237 197 757 Antisense
GGAGCATACTTTCATAATACACGCA 3 521 822 Antisense
GCAGAGTATCCATGGAACTCGCCAA 597 311 844 Antisense
GATCGTGCTGAACTTCTCAAAGCAA 188 419 1000 Antisense
TGAAGGAGATGTGTCTGGCCACCCA 412 575 1115 Antisense
GTCTGGCCACCCAAGCAAGGAAGGA 499 469 1127 Antisense
Sequence Source Affymetrix Proprietary Database