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[182543_at]

Description T20F7.3 /REP_DB=WormBase Gene ID /WP=CE13834 /TR=O02167 /GB=AAK18979.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 25.8
(-2.3)
A 		43
(-0.8)
A 		18.4
(-3)
A 		86.6
(3)
A 		68
B 30
(-3)
A 		47.1
(-1.2)
A 		65.6
(0.7)
M 		88.2
(3)
P 		58
C 63.4
(-0.6)
P 		38.5
(-3)
A 		61.1
(-0.8)
P 		101.4
(3)
P 		63
avr 39.7
(-3) 		42.9
(-2.6) 		48.4
(-2) 		92.1
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 38.7
(-0.4)
A 		23
(-3)
A 		36.9
(-0.7)
A 		53.1
(1.9)
P 		59.9
(3)
A 		55.6
(2.3)
M 		37
B 51.6
(-0.1)
A 		30.8
(-3)
A 		67.7
(2.1)
M 		73.9
(3)
M 		68.3
(2.2)
P 		53
(0.1)
M 		43
C 28.9
(-2.2)
A 		10.1
(-3)
A 		34.2
(-1.9)
A 		143.4
(3)
P 		45.1
(-1.4)
P 		64.9
(-0.5)
P 		133
avr 39.7
(-1.4) 		21.3
(-3) 		46.3
(-0.8) 		90.1
(3) 		57.8
(0.2) 		57.8
(0.2) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9.4
(0.5)
A 		9.3
(0.4)
A 		4.8
(-3)
A 		12.7
(3)
A 		8
B 9.6
(-3)
A 		11.6
(-1.7)
A 		15.2
(0.7)
M 		18.8
(3)
P 		9
C 21
(2.8)
P 		11.1
(-3)
A 		21.3
(3)
P 		17.1
(0.5)
P 		10
avr 13.3
(-0.2) 		10.7
(-3) 		13.8
(0.4) 		16.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 7.1
(-3)
A 		8.2
(-2.4)
A 		8
(-2.5)
A 		13.5
(0.5)
P 		18.1
(3)
A 		13.5
(0.5)
M 		11
B 18
(-0.4)
A 		10.3
(-3)
A 		16.4
(-0.9)
M 		19.6
(0.2)
M 		27.8
(3)
P 		19.8
(0.3)
M 		18
C 10.7
(-1.2)
A 		3.1
(-3)
A 		8.7
(-1.7)
A 		28.8
(3)
P 		14.6
(-0.3)
P 		21.7
(1.3)
P 		26
avr 11.9
(-0.9) 		7.2
(-3) 		11
(-1.3) 		20.6
(3) 		20.2
(2.8) 		18.3
(2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182543_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17340
Sequence Type Exemplar sequence
Representative Public ID T20F7.3 NCBI
Target Description T20F7.3 /REP_DB=WormBase Gene ID /WP=CE13834 /TR=O02167 /GB=AAK18979.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078323 NCBI Caenorhabditis elegans T20F7.3 (T20F7.3) mRNA, complete cds. 11/11 None
SNAP00000037347 ENSEMBL cdna:SNAP chromosome:CEL140:X:16860369:16861300:1 11/11 None
GENEFINDER00000037353 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16860369:16861300:1 11/11 None
T20F7.3 ENSEMBL cdna:known chromosome:CEL140:X:16860309:16861300:1 gene:T20F7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16860308-16861300(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T20F7.3
Entrez Gene 188657 Entrez gene
SwissProt O02167 EMBL-EBI
WormBase CE13834 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8440 inositol trisphosphate 3-kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18979 Hypothetical protein T20F7.3 [Caenorhabditis elegans] ref|NP_510724.1| T20F7.3 [Caenorhabditis elegans] 1.0E-155
blast AAK18979 Hypothetical protein T20F7.3 [Caenorhabditis elegans] ref|NP_510724.1| T20F7.3 [Caenorhabditis elegans] 1.0E-144
blast CAE69906 Hypothetical protein CBG16258 [Caenorhabditis briggsae] 8.0E-76
blast CAE69906 Hypothetical protein CBG16258 [Caenorhabditis briggsae] 9.0E-76
blast CAE66458 Hypothetical protein CBG11735 [Caenorhabditis briggsae] 1.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.5E-88
Pfam IPR005522 EMBL-EBI Inositol polyphosphate kinase 1.5E-88
Sequence
Target Sequence 
>C. ELEGANS:182543_AT
gtctgttctgatccaatgtccatgaaaacaatcaatttgctcttttctaatcaagcatct
ggacactaccttcttatgaaagacgaagcccacgcagcggtttccccgcggattcttgac
ttaaagcttggcaccagaactcacagtgattatatctcggaggagaagaagattaatcat
atcaaaaaatcattaagcactacgactgctgtactcggacttcgacttagtggagcaagt
ttcggaagaggagaggtcaagtggactaaggaagacggcaaacggatgaacgctgaaact
ttcaaaagagctatgaaacacttcttcgatgtttctcagccgaagaaaaatgcagcaaaa
cgccaacttctgaagatcaaagcatccttgaaatcgaatgaaaatactcgattctttgga
agttcattgctggtcatcattgatgacgacgtcgaaagtccggaagcatccgtcaaagtc
aaactcattgactttgcaagcatggctcgttcagaatacaatgcgccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGTTCTGATCCAATGTCCATGA 475 471 262 Antisense
ATCTGGACACTACCTTCTTATGAAA 42 35 318 Antisense
TCCCCGCGGATTCTTGACTTAAAGC 512 269 364 Antisense
AAAGCTTGGCACCAGAACTCACAGT 21 125 384 Antisense
AGCACTACGACTGCTGTACTCGGAC 340 77 457 Antisense
ACTCGGACTTCGACTTAGTGGAGCA 140 99 474 Antisense
ACTTCTTCGATGTTTCTCAGCCGAA 597 103 581 Antisense
GGAAGTTCATTGCTGGTCATCATTG 352 531 679 Antisense
GAAGCATCCGTCAAAGTCAAACTCA 666 339 724 Antisense
GACTTTGCAAGCATGGCTCGTTCAG 151 373 751 Antisense
GCTCGTTCAGAATACAATGCGCCAC 656 299 766 Antisense
Sequence Source Affymetrix Proprietary Database