[Home] | [Total List]

[182542_at]

Description K04E7.1 /REP_DB=WormBase Gene ID /WP=CE02796 /TR=Q21220 /GB=AAA80410.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 41.3
(-1.3)
A 		18.5
(-3)
A 		57.8
(-0.1)
A 		100.5
(3)
P 		82
B 57.3
(0.1)
P 		59.4
(0.5)
A 		43
(-3)
A 		70.8
(3)
M 		28
C 49.9
(-0.5)
P 		35.3
(-1.8)
A 		22.7
(-3)
A 		88.3
(3)
P 		66
avr 49.5
(-1.5) 		37.7
(-3) 		41.2
(-2.6) 		86.5
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 64.2
(3)
P 		24.2
(-2.3)
M 		54.4
(1.7)
P 		18.8
(-3)
A 		28.4
(-1.7)
A 		27.6
(-1.8)
A 		45
B 49.4
(2.4)
A 		54.6
(3)
P 		46.6
(2.1)
M 		45
(1.9)
A 		29.3
(0.2)
A 		1.3
(-3)
A 		53
C 15.4
(-2.2)
A 		72.8
(3)
P 		51.8
(1.1)
A 		27.1
(-1.2)
A 		29
(-1)
A 		6.8
(-3)
A 		66
avr 43
(1.8) 		50.5
(2.9) 		50.9
(3) 		30.3
(-0.2) 		28.9
(-0.4) 		11.9
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.1
(3)
A 		4
(-3)
A 		15.1
(3)
A 		14.7
(2.8)
P 		11
B 18.3
(3)
P 		14.7
(0.4)
A 		10
(-3)
A 		15.1
(0.7)
M 		8
C 16.5
(3)
P 		10.1
(-1.5)
A 		7.9
(-3)
A 		14.9
(1.9)
P 		9
avr 16.6
(3) 		9.6
(-3) 		11
(-1.8) 		14.9
(1.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 11.8
(3)
P 		8.6
(0.3)
M 		11.8
(3)
P 		4.8
(-3)
A 		8.6
(0.3)
A 		6.7
(-1.4)
A 		7
B 17.2
(2.7)
A 		18.2
(3)
P 		11.3
(0.7)
M 		11.9
(0.9)
A 		11.9
(0.9)
A 		0.5
(-3)
A 		18
C 5.7
(-2)
A 		22.2
(3)
P 		13.2
(0.3)
A 		5.5
(-2)
A 		9.4
(-0.9)
A 		2.3
(-3)
A 		20
avr 11.6
(0.8) 		16.3
(3) 		12.1
(1.1) 		7.4
(-1.1) 		10
(0.1) 		3.2
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16128
Sequence Type Exemplar sequence
Representative Public ID K04E7.1 NCBI
Target Description K04E7.1 /REP_DB=WormBase Gene ID /WP=CE02796 /TR=Q21220 /GB=AAA80410.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076687 NCBI Caenorhabditis elegans K04E7.1 (K04E7.1) mRNA, complete cds. 11/11 None
K04E7.1 ENSEMBL cdna:known chromosome:CEL140:X:6461984:6463183:1 gene:K04E7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029097 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6461983-6463183(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04E7.1
Entrez Gene 186986 Entrez gene
SwissProt Q21220 EMBL-EBI
WormBase CE02796 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80410 Hypothetical protein K04E7.1 [Caenorhabditis elegans] ref|NP_509088.1| K04E7.1 [Caenorhabditis elegans] 1.0E-116
blast CAE61263 Hypothetical protein CBG05069 [Caenorhabditis briggsae] 2.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509088.1 3 33-55,68-90,177-199
K04E7.1 3 33-55,68-90,177-199
Sequence
Target Sequence 
>C. ELEGANS:182542_AT
ttctggctctacttaacacactttacacttccggatttgcaatggcgtcctccagcactc
cattgctcaaaggtttgactcttgggcaaataattttttgtcattttaattttttcactt
ataggcagagtagcaagttttattatcacggaaaaactttgcacaccctatatgctgttt
cgtttgtcgtctacgtcaccaactctatttgctcttggcttcacatcagtttcgtggtta
aggtgataatgataataaagatcaatgtaaaaaccgaaattttaacttcagggatacgtg
acttcttttccactgaatacatggctagtggtttctttggttgttaccgcagtatgtgga
tcaatgtgcacatggtactttgtattgagaatgcatttgcacatagactagatattaccc
cctatcgaagcggatgcgctttgttgtttgaagcatttatagaatggacacaggcattca
acaatttccgaatgtcatttcttatcatggcactccacgatgcaccgatcacaattttca
attacttctttatcgcatcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGGCTCTACTTAACACACTTTA 16 695 56 Antisense
ACACTTCCGGATTTGCAATGGCGTC 592 105 80 Antisense
CTCCAGCACTCCATTGCTCAAAGGT 625 235 105 Antisense
AACTTTGCACACCCTATATGCTGTT 205 139 210 Antisense
ATATGCTGTTTCGTTTGTCGTCTAC 400 21 225 Antisense
ACTCTATTTGCTCTTGGCTTCACAT 208 101 257 Antisense
AGGGATACGTGACTTCTTTTCCACT 241 57 345 Antisense
GTGGTTTCTTTGGTTGTTACCGCAG 602 473 383 Antisense
GACTAGATATTACCCCCTATCGAAG 581 361 461 Antisense
GTCATTTCTTATCATGGCACTCCAC 420 467 549 Antisense
TCAATTACTTCTTTATCGCATCCTG 120 635 593 Antisense
Sequence Source Affymetrix Proprietary Database