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[182541_at]

Description H08J19.1 /REP_DB=WormBase Gene ID /WP=CE18806 /TR=Q9XXK3 /GB=CAA19426.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 40.6
(3)
A 		8.8
(-3)
A 		40.4
(3)
A 		30.2
(1)
A 		32
B 6.1
(-1.8)
A 		5.8
(-1.9)
A 		21.2
(3)
A 		2.2
(-3)
A 		19
C 28
(-2.2)
A 		50.8
(-0.3)
A 		18.3
(-3)
A 		91.8
(3)
M 		74
avr 24.9
(-2.1) 		21.8
(-3) 		26.6
(-1.5) 		41.4
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 28.9
(-1.7)
A 		16.4
(-3)
A 		36.7
(-1)
A 		75.9
(3)
A 		44.8
(-0.1)
A 		43.1
(-0.3)
A 		60
B 11.7
(-1.7)
A 		39.9
(2.1)
M 		35.7
(1.6)
A 		46.3
(3)
A 		4.6
(-2.7)
A 		2.1
(-3)
A 		44
C 30.3
(-1.3)
A 		88.7
(3)
P 		29.4
(-1.3)
A 		6.3
(-3)
A 		49.9
(0.2)
P 		27.6
(-1.4)
A 		82
avr 23.6
(-3) 		48.3
(3) 		33.9
(-0.5) 		42.8
(1.7) 		33.1
(-0.7) 		24.3
(-2.8) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.8
(3)
A 		1.9
(-3)
A 		10.6
(1)
A 		4.4
(-1.8)
A 		13
B 2
(-1)
A 		1.4
(-1.8)
A 		4.9
(3)
A 		0.5
(-3)
A 		4
C 9.3
(-1.1)
A 		14.6
(2.4)
A 		6.4
(-3)
A 		15.5
(3)
M 		9
avr 8.7
(3) 		6
(-3) 		7.3
(-0.1) 		6.8
(-1.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 5.3
(-3)
A 		5.8
(-2.8)
A 		8
(-1.8)
A 		19.3
(3)
A 		13.5
(0.5)
A 		10.5
(-0.8)
A 		14
B 4.1
(-1.4)
A 		13.3
(3)
M 		8.7
(0.8)
A 		12.3
(2.5)
A 		1.9
(-2.5)
A 		0.8
(-3)
A 		13
C 11.2
(-0.7)
A 		27.1
(3)
P 		7.5
(-1.6)
A 		1.3
(-3)
A 		16.1
(0.4)
P 		9.2
(-1.2)
A 		26
avr 6.9
(-2.9) 		15.4
(3) 		8.1
(-2.1) 		11
(-0.1) 		10.5
(-0.4) 		6.8
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182541_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17866
Sequence Type Exemplar sequence
Representative Public ID H08J19.1 NCBI
Target Description H08J19.1 /REP_DB=WormBase Gene ID /WP=CE18806 /TR=Q9XXK3 /GB=CAA19426.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078176(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078176 NCBI Caenorhabditis elegans H08J19.1 (H08J19.1) mRNA, complete cds. 11/11 None
SNAP00000013699 ENSEMBL cdna:SNAP chromosome:CEL140:X:15642838:15644254:1 11/11 None
GENEFINDER00000013700 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15642856:15644664:1 11/11 None
H08J19.1 ENSEMBL cdna:known chromosome:CEL140:X:15642856:15644254:1 gene:H08J19.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15642855-15644254(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H08J19.1
Entrez Gene 186707 Entrez gene
SwissProt Q9XXK3 EMBL-EBI
WormBase CE18806 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19426 Hypothetical protein H08J19.1 [Caenorhabditis elegans] ref|NP_510577.1| H08J19.1 [Caenorhabditis elegans] 8.0E-50
blast CAA19426 Hypothetical protein H08J19.1 [Caenorhabditis elegans] ref|NP_510577.1| H08J19.1 [Caenorhabditis elegans] 2.0E-49
blast CAE63341 Hypothetical protein CBG07742 [Caenorhabditis briggsae] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:182541_AT
tatccgacatccactacgttttggaacttcatggctgctcgaaaactgttatgatcaagg
cagctcgatcgattgcaactgtggagatgttcgttgaggcgaagacctttggtcgagtcg
ctgtgatattcaagagggagtatcagtttttcgaaaaccacgtccttcgtgatgagctgc
tcttcatcgactttttcaacggactgctcgaccgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCGACATCCACTACGTTTTGGA 160 657 35 Antisense
GAACTTCATGGCTGCTCGAAAACTG 331 349 58 Antisense
AACTGTTATGATCAAGGCAGCTCGA 438 143 78 Antisense
GGCAGCTCGATCGATTGCAACTGTG 452 535 93 Antisense
ACTGTGGAGATGTTCGTTGAGGCGA 143 97 112 Antisense
GGCGAAGACCTTTGGTCGAGTCGCT 702 539 132 Antisense
GGTCGAGTCGCTGTGATATTCAAGA 18 503 145 Antisense
CAAGAGGGAGTATCAGTTTTTCGAA 547 105 165 Antisense
GAAAACCACGTCCTTCGTGATGAGC 309 355 187 Antisense
GTGATGAGCTGCTCTTCATCGACTT 555 483 203 Antisense
TTTTTCAACGGACTGCTCGACCGTC 567 673 226 Antisense
Sequence Source Affymetrix Proprietary Database