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[182540_at]

Description F55A11.8 /REP_DB=WormBase Gene ID /WP=CE05950 /TR=Q20803 /GB=CAA96661.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 06      6grp_total > 97      4grp_total > 02      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 379
1 2 3 4 range
A 68.4
(-3)
P 		78
(-2.7)
P 		110
(-1.8)
P 		284.5
(3)
P 		216
B 73.5
(-2.6)
P 		56.1
(-3)
P 		71.4
(-2.7)
P 		346
(3)
P 		290
C 102
(-3)
P 		110.9
(-2.8)
M 		106.1
(-2.9)
P 		435
(3)
P 		333
avr 81.3
(-3) 		81.7
(-3) 		95.8
(-2.7) 		355.2
(3) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 954
1 2 3 4 5 6 range
A 33
(-3)
A 		91.4
(-2.5)
M 		129
(-2.2)
P 		229.5
(-1.4)
P 		640
(1.9)
P 		773.1
(3)
P 		740
B 81.5
(-3)
P 		89.1
(-2.9)
P 		147.7
(-2.5)
P 		236.6
(-1.9)
P 		698.8
(1.3)
P 		944
(3)
P 		863
C 63.8
(-3)
P 		68.9
(-3)
P 		100.9
(-2.8)
P 		323.1
(-1.3)
P 		583.8
(0.4)
P 		986.7
(3)
P 		923
avr 59.4
(-3) 		83.1
(-2.8) 		125.9
(-2.5) 		263.1
(-1.5) 		640.9
(1.1) 		901.3
(3) 		842
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 24.9
(-1.1)
P 		16.9
(-3)
P 		28.8
(-0.1)
P 		41.6
(3)
P 		25
B 23.4
(-2)
P 		13.9
(-3)
P 		16.6
(-2.7)
P 		73.7
(3)
P 		60
C 33.8
(-2.7)
P 		31.9
(-3)
M 		37
(-2.3)
P 		73.3
(3)
P 		41
avr 27.4
(-2.1) 		20.9
(-3) 		27.5
(-2.1) 		62.9
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 346
1 2 3 4 5 6 range
A 6.1
(-3)
A 		32.5
(-2.2)
M 		28.1
(-2.3)
P 		58.2
(-1.3)
P 		193.1
(3)
P 		188.2
(2.8)
P 		187
B 28.3
(-3)
P 		29.7
(-3)
P 		35.9
(-2.9)
P 		62.7
(-2.4)
P 		283.9
(1.7)
P 		352
(3)
P 		324
C 23.6
(-2.9)
P 		21
(-3)
P 		25.7
(-2.9)
P 		65
(-2.1)
P 		188.9
(0.3)
P 		330.3
(3)
P 		309
avr 19.3
(-3) 		27.7
(-2.8) 		29.9
(-2.8) 		62
(-2.1) 		222
(1.5) 		290.2
(3) 		271
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182540_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13443
Sequence Type Exemplar sequence
Representative Public ID F55A11.8 NCBI
Target Description F55A11.8 /REP_DB=WormBase Gene ID /WP=CE05950 /TR=Q20803 /GB=CAA96661.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073573(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073573 NCBI Caenorhabditis elegans F55A11.8 (F55A11.8) mRNA, complete cds. 11/11 None
SNAP00000030961 ENSEMBL cdna:SNAP chromosome:CEL140:V:11790776:11791627:1 11/11 None
GENEFINDER00000030963 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11790776:11791627:1 11/11 None
F55A11.8 ENSEMBL cdna:known chromosome:CEL140:V:11790554:11791627:1 gene:F55A11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11790553-11791627(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A11.8
Entrez Gene 186278 Entrez gene
SwissProt Q20803 EMBL-EBI
WormBase CE05950 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96661 Hypothetical protein F55A11.8 [Caenorhabditis elegans] ref|NP_505974.1| F55A11.8 [Caenorhabditis elegans] 1.0E-150
blast CAA96661 Hypothetical protein F55A11.8 [Caenorhabditis elegans] ref|NP_505974.1| F55A11.8 [Caenorhabditis elegans] 1.0E-107
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505974.1 2 5-27,34-56
F55A11.8 2 5-27,34-56
Sequence
Target Sequence 
>C. ELEGANS:182540_AT
cgaagaagtgcgcgacgaccgaagccgattaaaaatgtcgatttggattatgattacgac
tacgatataattcagtatacttcaactgacgactcacactttgcaaattcccgtggaatg
aataaatcaggacattatgtagttccagagccggttgcatttgaagaagtccttactgtg
caagagctcaacgaagttgatgcgttcatttatggagatgatatgtttgaatacgcggat
gttcattgtcaaagaggccgagcaaattattttagaactgctacgggatcaatgggacca
ttcctgaacacaaatttattttcaattccgaacaaaaacggcacagttttgcgaaatctc
gtaaagctccaaaaagaaaacttagctgagatgaattcaacggatattattaacgtacat
tgtaaaaatctaaattctcgactcgaacatgttgccaactcctattcggacgcgtggaaa
tatccgccaccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAAGAAGTGCGCGACGACCGAAGC 522 253 286 Antisense
GTATACTTCAACTGACGACTCACAC 310 447 360 Antisense
GACTCACACTTTGCAAATTCCCGTG 563 373 376 Antisense
TGTAGTTCCAGAGCCGGTTGCATTT 39 559 423 Antisense
GAAGTCCTTACTGTGCAAGAGCTCA 64 333 451 Antisense
GAACTGCTACGGGATCAATGGGACC 414 349 560 Antisense
CAATGGGACCATTCCTGAACACAAA 381 183 575 Antisense
ACGGCACAGTTTTGCGAAATCTCGT 654 95 623 Antisense
TCGACTCGAACATGTTGCCAACTCC 365 599 723 Antisense
CCAACTCCTATTCGGACGCGTGGAA 442 275 740 Antisense
ACGCGTGGAAATATCCGCCACCAGC 585 89 755 Antisense
Sequence Source Affymetrix Proprietary Database