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[182538_at]

Description C15H9.4 /REP_DB=WormBase Gene ID /WP=CE03996 /TR=Q18025 /GB=AAB52664.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 36      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_total > 36      4grp_total > 06      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 161.8
(0.8)
P 		86.2
(-3)
P 		95.9
(-2.5)
P 		206.5
(3)
P 		120
B 136.1
(-0.1)
P 		78.4
(-3)
P 		116.9
(-1)
P 		196
(3)
P 		118
C 137.2
(-0.5)
P 		86.6
(-3)
P 		118.5
(-1.4)
P 		209.3
(3)
P 		123
avr 145
(0.1) 		83.7
(-3) 		110.4
(-1.7) 		203.9
(3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 96.3
(1.5)
P 		102.1
(2)
P 		77.5
(-0.2)
P 		94.3
(1.3)
P 		45.4
(-3)
P 		113
(3)
P 		68
B 138.1
(3)
P 		113.8
(1.2)
P 		76.2
(-1.6)
P 		58
(-3)
P 		67.2
(-2.3)
P 		107.5
(0.7)
P 		80
C 146.8
(3)
P 		135.3
(2.2)
P 		90.6
(-0.8)
P 		57.9
(-3)
A 		75.4
(-1.8)
P 		131.5
(2)
P 		89
avr 127.1
(3) 		117.1
(2.1) 		81.4
(-1.3) 		70.1
(-2.3) 		62.7
(-3) 		117.3
(2.1) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 58.9
(3)
P 		18.7
(-3)
P 		25.1
(-2)
P 		30.2
(-1.3)
P 		40
B 43.4
(3)
P 		19.4
(-3)
P 		27.1
(-1.1)
P 		41.8
(2.6)
P 		24
C 45.4
(3)
P 		24.9
(-3)
P 		41.3
(1.8)
P 		35.3
(0)
P 		21
avr 49.2
(3) 		21
(-3) 		31.2
(-0.8) 		35.8
(0.1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 17.8
(-1.9)
P 		36.3
(3)
P 		16.9
(-2.2)
P 		23.9
(-0.3)
P 		13.7
(-3)
P 		27.5
(0.7)
P 		23
B 48.1
(3)
P 		37.9
(1.1)
P 		18.5
(-2.4)
P 		15.4
(-3)
P 		27.3
(-0.8)
P 		40.1
(1.5)
P 		33
C 54.4
(3)
P 		41.3
(1.2)
P 		23.1
(-1.4)
P 		11.7
(-3)
A 		24.4
(-1.2)
P 		44
(1.5)
P 		43
avr 40.1
(3) 		38.5
(2.6) 		19.5
(-2.4) 		17
(-3) 		21.8
(-1.8) 		37.2
(2.2) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182538_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16135
Sequence Type Exemplar sequence
Representative Public ID C15H9.4 NCBI
Target Description C15H9.4 /REP_DB=WormBase Gene ID /WP=CE03996 /TR=Q18025 /GB=AAB52664.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076620(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076620 NCBI Caenorhabditis elegans C15H9.4 (C15H9.4) mRNA, complete cds. 11/11 None
SNAP00000042801 ENSEMBL cdna:SNAP chromosome:CEL140:X:6101160:6105328:1 11/11 None
GENEFINDER00000042808 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6103664:6105328:1 11/11 None
C15H9.4 ENSEMBL cdna:known chromosome:CEL140:X:6101160:6105328:1 gene:C15H9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6101159-6105328(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15H9.4
Entrez Gene 182643 Entrez gene
SwissProt Q18025 EMBL-EBI
WormBase CE03996 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.15740.1.S1_S_AT similar to transmembrane and coiled-coil domains 2 cfa
DROSOPHILA_2:1629077_S_AT dm
DROSGENOME1:141271_AT dm
CHICKEN:GGA.16174.1.S1_AT similar to RIKEN cDNA 1110063G11 gga
CHICKEN:GGAAFFX.26657.2.S1_S_AT similar to RIKEN cDNA 1110063G11 gga
MG-U74BV2:113565_AT transmembrane and coiled-coil domains 2 mm
MOE430A:1428108_X_AT transmembrane and coiled-coil domains 2 mm
MOUSE430A_2:1428108_X_AT transmembrane and coiled-coil domains 2 mm
MOUSE430_2:1428108_X_AT transmembrane and coiled-coil domains 2 mm
MOE430A:1452666_A_AT transmembrane and coiled-coil domains 2 mm
MOUSE430A_2:1452666_A_AT transmembrane and coiled-coil domains 2 mm
MOUSE430_2:1452666_A_AT transmembrane and coiled-coil domains 2 mm
MU19KSUBA:TC15678_AT MKIAA0481 protein mm
MU19KSUBA:TC22783_AT MKIAA0481 protein mm
MU19KSUBA:TC22783_G_AT MKIAA0481 protein mm
MU19KSUBA:TC22784_AT MKIAA0481 protein mm
MU19KSUBA:TC22784_G_AT MKIAA0481 protein mm
MU19KSUBA:TC23119_AT MKIAA0481 protein mm
RAE230A:1374160_AT Similar to RIKEN cDNA 1110063G11 (predicted) rn
RAT230_2:1374160_AT Similar to RIKEN cDNA 1110063G11 (predicted) rn
RAE230B:1397103_AT Similar to RIKEN cDNA 1110063G11 (predicted) rn
RAT230_2:1397103_AT Similar to RIKEN cDNA 1110063G11 (predicted) rn
RG-U34C:RC_AI145718_AT Similar to RIKEN cDNA 1110063G11 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB52664 Hypothetical protein C15H9.4 [Caenorhabditis elegans] ref|NP_509021.1| C15H9.4 [Caenorhabditis elegans] 0.0
blast CAE68868 Hypothetical protein CBG14831 [Caenorhabditis briggsae] 0.0
blast AAB52664 Hypothetical protein C15H9.4 [Caenorhabditis elegans] ref|NP_509021.1| C15H9.4 [Caenorhabditis elegans] 1.0E-157
blast CAE68868 Hypothetical protein CBG14831 [Caenorhabditis briggsae] 1.0E-114
blast XP_392341 PREDICTED: similar to CG1021-PA, isoform A [Apis mellifera] 6.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509021.1 2 398-420,433-450
C15H9.4 2 398-420,433-450
SNAP00000042801 2 398-420,433-450
GENEFINDER00000042808 2 228-250,263-280
Sequence
Target Sequence 
>C. ELEGANS:182538_AT
ctcatgctgctcccagcgaagaaggatttaatgccatccatgagcatctcaacagtatcc
tgcaacacttgatgcttattgatagaaaatacgacagactggaggatgatatcaaaaagg
agatcaaattctacgcggaggctttggaagaggaacgattcaagacgacgaagctcgaag
aaattctgaacgaggctgttgagttgcagcaagctgagattgcgacactgaaggagcaaa
acctgatggcgacgcgtgtggattatcagcacaatgaccggttcaggaatgttgaggaga
acatggagtcactgcagaatcatcttgtgagaatcgagaatgcattgatggacgtcagac
aagtcaagctgacgagtaatgtgtggcaacgtgttgctctcaatgcaggaaatattgtcg
tagagctgctgaaaattgcactgtttgtcgtcgcgtcgatccttgatttggttcgccctt
tgactggttccagaaatcgctctgcaatggcatttggactcgttttcctggccattttct
ttgggcatcatcttcaaaaagtgacctacctgtttggaggcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCATGCTGCTCCCAGCGAAGAAGG 20 229 809 Antisense
TAATGCCATCCATGAGCATCTCAAC 216 637 837 Antisense
GCATCTCAACAGTATCCTGCAACAC 589 309 852 Antisense
GCAAAACCTGATGGCGACGCGTGTG 621 317 1044 Antisense
GCAACGTGTTGCTCTCAATGCAGGA 10 321 1194 Antisense
GAAAATTGCACTGTTTGTCGTCGCG 566 353 1239 Antisense
GCGTCGATCCTTGATTTGGTTCGCC 85 291 1261 Antisense
GACTGGTTCCAGAAATCGCTCTGCA 595 375 1290 Antisense
GGCATTTGGACTCGTTTTCCTGGCC 408 537 1317 Antisense
TCCTGGCCATTTTCTTTGGGCATCA 27 595 1334 Antisense
GTGACCTACCTGTTTGGAGGCAGCA 210 481 1369 Antisense
Sequence Source Affymetrix Proprietary Database