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[182537_at]

Description C30E1.6 /REP_DB=WormBase Gene ID /WP=CE08473 /TR=O17331 /GB=AAB71251.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 5
(-3)
A 		22.1
(3)
A 		7.4
(-2.2)
A 		12.7
(-0.3)
A 		17
B 5.5
(-2.7)
A 		3.8
(-3)
A 		9.5
(-2.1)
A 		41.2
(3)
A 		37
C 38.8
(1.2)
A 		8.4
(-3)
A 		22.3
(-1.1)
A 		52.3
(3)
A 		44
avr 16.4
(-1.8) 		11.4
(-3) 		13.1
(-2.6) 		35.4
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 46.6
(-2.2)
A 		41.6
(-3)
A 		46.1
(-2.2)
A 		64.9
(0.9)
A 		77.4
(3)
A 		62.2
(0.5)
A 		36
B 33.4
(-3)
A 		39.1
(-1.9)
A 		60.3
(2.2)
A 		55.8
(1.3)
A 		64.4
(3)
A 		45.2
(-0.7)
A 		31
C 25.6
(-2.7)
A 		30.5
(-2.4)
A 		76.4
(0)
A 		131.5
(3)
A 		52.7
(-1.2)
A 		20.2
(-3)
A 		111
avr 35.2
(-3) 		37.1
(-2.8) 		60.9
(0.2) 		84.1
(3) 		64.8
(0.6) 		42.5
(-2.1) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.8
(-3)
A 		4.8
(3)
A 		1.9
(-2.8)
A 		1.9
(-2.8)
A 		3
B 1.7
(-2.4)
A 		0.9
(-3)
A 		2.2
(-2)
A 		8.8
(3)
A 		8
C 12.8
(3)
A 		2.4
(-3)
A 		7.8
(0.1)
A 		8.8
(0.7)
A 		10
avr 5.4
(1.3) 		2.7
(-3) 		4
(-0.9) 		6.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 8.6
(-3)
A 		14.8
(-0.5)
A 		10.1
(-2.4)
A 		16.4
(0.2)
A 		23.3
(3)
A 		15.1
(-0.3)
A 		15
B 11.6
(-3)
A 		13
(-2.4)
A 		14.6
(-1.8)
A 		14.8
(-1.7)
A 		26.2
(3)
A 		16.9
(-0.8)
A 		15
C 9.5
(-2.2)
A 		9.3
(-2.2)
A 		19.4
(0.9)
A 		26.4
(3)
A 		17
(0.1)
A 		6.8
(-3)
A 		20
avr 9.9
(-3) 		12.4
(-1.8) 		14.7
(-0.7) 		19.2
(1.5) 		22.2
(3) 		12.9
(-1.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182537_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17864
Sequence Type Exemplar sequence
Representative Public ID C30E1.6 NCBI
Target Description C30E1.6 /REP_DB=WormBase Gene ID /WP=CE08473 /TR=O17331 /GB=AAB71251.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078335(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078335 NCBI Caenorhabditis elegans C30E1.6 (C30E1.6) mRNA, complete cds. 11/11 None
GENEFINDER00000041128 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16914392:16916713:1 11/11 None
C30E1.6 ENSEMBL cdna:known chromosome:CEL140:X:16915755:16916713:1 gene:C30E1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16915753-16916713(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30E1.6
Entrez Gene 183049 Entrez gene
SwissProt O17331 EMBL-EBI
WormBase CE35415 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71251 Hypothetical protein C30E1.6 [Caenorhabditis elegans] ref|NP_510736.2| C30E1.6 [Caenorhabditis elegans] 1.0E-141
blast AAB71251 Hypothetical protein C30E1.6 [Caenorhabditis elegans] ref|NP_510736.2| C30E1.6 [Caenorhabditis elegans] 1.0E-104
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 6.0E-70
blast AAB71252 Hypothetical protein C30E1.7 [Caenorhabditis elegans] ref|NP_510735.1| C30E1.7 [Caenorhabditis elegans] 2.0E-66
blast AAB53817 Hypothetical protein C08A9.3 [Caenorhabditis elegans] ref|NP_510761.1| C08A9.3 [Caenorhabditis elegans] 7.0E-52
blast AAB71247 Hypothetical protein C30E1.2 [Caenorhabditis elegans] ref|NP_510741.1| C30E1.2 [Caenorhabditis elegans] 8.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510736.2 5 5-22,32-54,100-119,123-145,158-180
C30E1.6 5 5-22,32-54,100-119,123-145,158-180
GENEFINDER00000041128 6 51-73,155-177,203-225,344-363,367-389,402-424
Sequence
Target Sequence 
>C. ELEGANS:182537_AT
gccatgatcgctatgatttcctcagcaatgtttttctgctaccaagaccattgggaaccc
aagaaaaccagtgggatatgtgtctacggaaaaagaaacaagagcatcagcttttacccg
aagaaaatatagttgtcaaatataaacctctaaagtcaaaactagttctcatatttttag
taatgactttgtcattcgtcatgccaatactttcatttacgattcctaatttttcaatca
gcttctcaatctttctttgggcgaaattgcaagttttaatctatttctttttctatattg
ttcgaaaagcaataattgaacacaaaacgttcactaaaagttttatcggctcttgcacac
ttctcataattgcgttcgtcttgttggaattcgcgagtcgcttcttggaattgtttgagc
caacttatgatgttatgctgacacctgccaagtttcgtgaactcaactcggattgcattg
ctcccggctttgactggaacgatgtgcgacattattgttgtgcaattgactacctcattt
ttattgcactaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCATGATCGCTATGATTTCCTCAG 161 279 107 Antisense
ATGTTTTTCTGCTACCAAGACCATT 304 45 134 Antisense
GTCATTCGTCATGCCAATACTTTCA 212 467 297 Antisense
TCAGCTTCTCAATCTTTCTTTGGGC 247 625 344 Antisense
AAAAGTTTTATCGGCTCTTGCACAC 303 133 442 Antisense
CACACTTCTCATAATTGCGTTCGTC 277 193 462 Antisense
TGCGTTCGTCTTGTTGGAATTCGCG 250 583 477 Antisense
TTCGCGAGTCGCTTCTTGGAATTGT 596 697 496 Antisense
TGCTGACACCTGCCAAGTTTCGTGA 555 581 542 Antisense
TCAACTCGGATTGCATTGCTCCCGG 253 631 569 Antisense
GACTACCTCATTTTTATTGCACTAA 246 373 634 Antisense
Sequence Source Affymetrix Proprietary Database