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[182536_at]

Description C18G1.8 /REP_DB=WormBase Gene ID /WP=CE17424 /TR=O61922 /GB=AAC17760.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 62      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 54.5
(3)
A 		11.1
(-2.8)
A 		46.8
(2)
A 		9.7
(-3)
A 		45
B 40.2
(1.7)
A 		50.2
(3)
A 		31.3
(0.6)
A 		2.9
(-3)
A 		47
C 31.7
(3)
A 		4.5
(-3)
A 		19.1
(0.2)
A 		11.9
(-1.4)
A 		27
avr 42.1
(3) 		21.9
(-0.6) 		32.4
(1.3) 		8.2
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 63.5
(3)
A 		26.8
(-0.8)
A 		33.4
(-0.1)
A 		9.8
(-2.6)
A 		5.9
(-3)
A 		26.6
(-0.8)
A 		58
B 12
(-1.3)
A 		5.1
(-2.4)
A 		37
(3)
A 		9.6
(-1.7)
A 		6.1
(-2.3)
A 		1.8
(-3)
A 		35
C 29
(3)
A 		18.6
(0.5)
A 		12.5
(-0.9)
A 		9.1
(-1.7)
A 		3.6
(-3)
A 		6.2
(-2.4)
A 		25
avr 34.8
(3) 		16.8
(-0.6) 		27.6
(1.5) 		9.5
(-2.1) 		5.2
(-3) 		11.5
(-1.7) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 19.9
(3)
A 		2.4
(-2.7)
A 		12.2
(0.5)
A 		1.4
(-3)
A 		19
B 12.8
(3)
A 		12.4
(2.8)
A 		7.3
(0.3)
A 		0.6
(-3)
A 		12
C 10.5
(3)
A 		1.3
(-3)
A 		6.6
(0.5)
A 		2
(-2.5)
A 		9
avr 14.4
(3) 		5.4
(-1.1) 		8.7
(0.4) 		1.3
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 11.7
(3)
A 		9.5
(1.7)
A 		7.3
(0.3)
A 		2.5
(-2.6)
A 		1.8
(-3)
A 		6.5
(-0.2)
A 		10
B 4.2
(-0.5)
A 		1.7
(-2.3)
A 		9
(3)
A 		2.5
(-1.7)
A 		2.5
(-1.7)
A 		0.7
(-3)
A 		8
C 10.7
(3)
A 		5.7
(-0.2)
A 		3.2
(-1.7)
A 		1.8
(-2.6)
A 		1.2
(-3)
A 		2.1
(-2.4)
A 		10
avr 8.9
(3) 		5.6
(0.2) 		6.5
(1) 		2.3
(-2.6) 		1.8
(-3) 		3.1
(-1.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182536_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15781
Sequence Type Exemplar sequence
Representative Public ID C18G1.8 NCBI
Target Description C18G1.8 /REP_DB=WormBase Gene ID /WP=CE17424 /TR=O61922 /GB=AAC17760.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071880(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071880 NCBI Caenorhabditis elegans C18G1.8 (C18G1.8) mRNA, complete cds. 11/11 None
GENEFINDER00000018236 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4764080:4766516:-1 9/11 None
C18G1.8 ENSEMBL cdna:known chromosome:CEL140:V:4764080:4766516:-1 gene:C18G1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4764079-4766516(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18G1.8
Entrez Gene 182798 Entrez gene
SwissProt O61922 EMBL-EBI
WormBase CE17424 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17760 Hypothetical protein C18G1.8 [Caenorhabditis elegans] ref|NP_504281.1| C18G1.8 [Caenorhabditis elegans] 0.0
blast AAB94261 Hypothetical protein C14C6.3 [Caenorhabditis elegans] ref|NP_503240.2| C14C6.3 [Caenorhabditis elegans] 1.0E-108
blast AAB94261 Hypothetical protein C14C6.3 [Caenorhabditis elegans] ref|NP_503240.2| C14C6.3 [Caenorhabditis elegans] 1.0E-97
blast AAB70365 Hypothetical protein K06H6.6 [Caenorhabditis elegans] ref|NP_503253.1| K06H6.6 [Caenorhabditis elegans] 3.0E-97
blast AAB70365 Hypothetical protein K06H6.6 [Caenorhabditis elegans] ref|NP_503253.1| K06H6.6 [Caenorhabditis elegans] 1.0E-91
Protein Domains
Database ID Description E-Value
scop a.4.5.CAP C-terminal domain-like All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; CAP C-terminal domain-like 6.69999980926514
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 2.9E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504281.1 1 29-51
C18G1.8 1 29-51
GENEFINDER00000018236 1 29-51
Sequence
Target Sequence 
>C. ELEGANS:182536_AT
tatcgatgaccagtacttgcatattacagggatatttttgcagtcgtggaaatatttctc
taacatgaaggacgagcttacaggatatttgaaaaagtctggagcaaagtttggctttct
tccaaaatcagataaaaacacacatgtaaactgcgttcatgtgcgaaagggtgacttcca
agcagttggattcgctactgcagatttgaagtttgtcagaagtgcaataagatttattga
aaagaaaggtaaattctcgatatggttctttttgcattttgaatctttcaattcccatga
gattcaaaaaaaaaatttagttattcagaaaacgaattcaactcactttatatctcaaaa
catgcctgcagatgatttaatttattcaaaaaatcattgtgattcagttttaatcagttc
tccacactccacattcggctggtggattggatatttttcaaaagggaataaagtttatta
catggacatcagagaaacaaacgatcggagacacggacaattactgccttatgattattt
cttgcctcactggacacctctaaaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCGATGACCAGTACTTGCATATT 22 659 504 Antisense
ACAGGGATATTTTTGCAGTCGTGGA 652 105 529 Antisense
GGAGCAAAGTTTGGCTTTCTTCCAA 41 521 604 Antisense
GTAAACTGCGTTCATGTGCGAAAGG 509 461 649 Antisense
GAAAGGGTGACTTCCAAGCAGTTGG 207 359 668 Antisense
GTTGGATTCGCTACTGCAGATTTGA 5 437 688 Antisense
AATTCTCGATATGGTTCTTTTTGCA 363 177 755 Antisense
GAATTCAACTCACTTTATATCTCAA 210 325 837 Antisense
AGTTTTAATCAGTTCTCCACACTCC 495 63 909 Antisense
GAGACACGGACAATTACTGCCTTAT 182 393 1011 Antisense
GCCTCACTGGACACCTCTAAAATAT 70 281 1047 Antisense
Sequence Source Affymetrix Proprietary Database