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[182534_at]

Description Y17D7B.2 /REP_DB=WormBase Gene ID /WP=CE16591 /TR=O45909 /GB=CAA16298.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 39      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 62.8
(3)
A 		37.9
(-2.3)
A 		36.7
(-2.5)
M 		34.4
(-3)
A 		28
B 107.6
(3)
A 		56.3
(-2.1)
A 		60.4
(-1.7)
P 		47.1
(-3)
M 		61
C 74.3
(-1.3)
A 		76.3
(-1.1)
A 		59.5
(-3)
A 		111.7
(3)
A 		52
avr 81.6
(3) 		56.8
(-2.1) 		52.2
(-3) 		64.4
(-0.5) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 93.8
(-0.1)
A 		126.7
(3)
P 		92.8
(-0.2)
P 		84.6
(-1)
M 		72.9
(-2.1)
P 		63.9
(-3)
A 		63
B 66.2
(-1.2)
A 		82
(1.2)
P 		93.8
(3)
A 		80.1
(0.9)
A 		72.8
(-0.2)
M 		54.4
(-3)
A 		39
C 82.9
(1.4)
A 		89.9
(1.9)
A 		88.5
(1.8)
M 		104
(3)
A 		26.3
(-3)
A 		53.8
(-0.9)
P 		78
avr 81
(0.4) 		99.5
(3) 		91.7
(1.9) 		89.6
(1.6) 		57.3
(-3) 		57.4
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 22.9
(3)
A 		8.2
(-1.9)
A 		9.6
(-1.5)
M 		5
(-3)
A 		18
B 34.3
(3)
A 		13.9
(-2)
A 		14
(-2)
P 		10
(-3)
M 		24
C 24.6
(3)
A 		21.9
(0.2)
A 		20.7
(-1)
A 		18.8
(-3)
A 		6
avr 27.3
(3) 		14.7
(-1.7) 		14.8
(-1.7) 		11.3
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 17.3
(-2.7)
A 		45.1
(3)
P 		20.2
(-2.1)
P 		21.5
(-1.8)
M 		22
(-1.7)
P 		15.6
(-3)
A 		30
B 23.1
(-1.2)
A 		27.3
(1.5)
P 		22.8
(-1.4)
A 		21.2
(-2.4)
A 		29.6
(3)
M 		20.3
(-3)
A 		9
C 30.7
(3)
A 		27.4
(2.1)
A 		22.5
(0.8)
M 		20.9
(0.4)
A 		8.5
(-3)
A 		18
(-0.4)
P 		22
avr 23.7
(-0.8) 		33.3
(3) 		21.8
(-1.5) 		21.2
(-1.7) 		20
(-2.2) 		18
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182534_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14228
Sequence Type Exemplar sequence
Representative Public ID Y17D7B.2 NCBI
Target Description Y17D7B.2 /REP_DB=WormBase Gene ID /WP=CE16591 /TR=O45909 /GB=CAA16298.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075270(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075270 NCBI Caenorhabditis elegans Y17D7B.2 (Y17D7B.2) mRNA, complete cds. 11/11 None
GENEFINDER00000003527 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18790421:18793308:1 10/11 None
Y17D7B.2 ENSEMBL cdna:known chromosome:CEL140:V:18790421:18792296:1 gene:Y17D7B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18790420-18792296(+) 73.33 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17D7B.2
Entrez Gene 189446 Entrez gene
SwissProt O45909 EMBL-EBI
WormBase CE16591 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16298 Hypothetical protein Y17D7B.2 [Caenorhabditis elegans] ref|NP_507671.1| Y17D7B.2 [Caenorhabditis elegans] 1.0E-145
blast CAA16298 Hypothetical protein Y17D7B.2 [Caenorhabditis elegans] ref|NP_507671.1| Y17D7B.2 [Caenorhabditis elegans] 1.0E-133
blast CAE56022 Hypothetical protein CBG23580 [Caenorhabditis briggsae] 1.0E-56
blast CAE57119 Hypothetical protein CBG25029 [Caenorhabditis briggsae] 1.0E-56
Sequence
Target Sequence 
>C. ELEGANS:182534_AT
gaagcgacgttgggagatggattttatggcggaaattcaaaaaattcagtcaacttcttc
agaaaatttaacggtcctatttttggaacggacatgtactgggccttatcagtatttacg
ctacctagaaaccaccctccttggacaattcagaatccgtgctgtgcattcaatttctga
ggatcatttttatagaaaaacggagatcaattcgattttcgggcaagattttcagaattt
ctcagagaaaatgcaagaaatctctgaaaatcttgaaaattctggaattgtggcctacaa
tttcattgagccaccggaaaattttatgaaaatttttgcgaaaaagtgcatcagcaagaa
gaatatggattcaccctacacatccggatggattcgaaaacggcgccaaaaagagatcag
aaaatatttgaaattttatgaagttatcgattttttggatgaaaatttcgaggagttcgg
acacgaattttcagaaaataatgaattgttcgctgaaactccacgtcaaaaatggtacaa
attggaggatcatcttgtagaaaatcggaaaatcttcccattttacatgaactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCGACGTTGGGAGATGGATTTT 436 343 135 Antisense
GAACGGACATGTACTGGGCCTTATC 312 347 220 Antisense
CTTATCAGTATTTACGCTACCTAGA 65 223 239 Antisense
CCACCCTCCTTGGACAATTCAGAAT 223 275 266 Antisense
GAATCCGTGCTGTGCATTCAATTTC 166 331 287 Antisense
ACGGAGATCAATTCGATTTTCGGGC 477 93 334 Antisense
GGCCTACAATTTCATTGAGCCACCG 668 521 426 Antisense
AGAATATGGATTCACCCTACACATC 365 75 494 Antisense
CACCCTACACATCCGGATGGATTCG 202 201 506 Antisense
TGTTCGCTGAAACTCCACGTCAAAA 340 563 641 Antisense
AATCTTCCCATTTTACATGAACTAT 569 167 705 Antisense
Sequence Source Affymetrix Proprietary Database