[Home] | [Total List]

[182531_at]

Description T06C12.5 /REP_DB=WormBase Gene ID /WP=CE16355 /TR=O18044 /GB=CAB03305.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 25.1
(-3)
A 		35.6
(-2.2)
A 		49.2
(-1.1)
A 		99.9
(3)
P 		75
B 50
(-0.7)
P 		70.3
(3)
P 		37.8
(-3)
A 		58.4
(0.8)
A 		33
C 47.4
(-0.9)
P 		78.3
(2.2)
A 		26.9
(-3)
A 		86.1
(3)
P 		59
avr 40.8
(-2.6) 		61.4
(0.2) 		38
(-3) 		81.5
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 33.1
(-2.2)
A 		25.1
(-3)
A 		71.1
(1.8)
P 		41.4
(-1.3)
A 		57.1
(0.4)
M 		82.3
(3)
P 		57
B 49.8
(0.5)
A 		45.2
(-0.4)
A 		51.1
(0.8)
A 		35.7
(-2.3)
A 		32
(-3)
A 		62.3
(3)
P 		30
C 29.7
(-3)
A 		36.7
(-2.3)
A 		54.8
(-0.5)
A 		50.3
(-0.9)
A 		35.2
(-2.4)
A 		89.2
(3)
P 		60
avr 37.5
(-2.7) 		35.7
(-3) 		59
(0.3) 		42.5
(-2) 		41.4
(-2.2) 		77.9
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.1
(-1.8)
A 		7.7
(-3)
A 		12.8
(1.4)
A 		14.6
(3)
P 		7
B 15.9
(2)
P 		17.4
(3)
P 		8.8
(-3)
A 		12.5
(-0.4)
A 		9
C 15.7
(-0.1)
P 		22.5
(3)
A 		9.4
(-3)
A 		14.5
(-0.7)
P 		13
avr 13.6
(0.5) 		15.9
(3) 		10.3
(-3) 		13.9
(0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 6.1
(-3)
A 		8.9
(-1.8)
A 		15.5
(1.1)
P 		10.5
(-1.1)
A 		17.2
(1.8)
M 		20
(3)
P 		14
B 17.3
(0.4)
A 		15
(-0.6)
A 		12.4
(-1.7)
A 		9.5
(-3)
A 		13
(-1.5)
A 		23.2
(3)
P 		14
C 11
(-2.7)
A 		11.2
(-2.7)
A 		13.9
(-1.8)
A 		10.1
(-3)
A 		11.4
(-2.6)
A 		29.9
(3)
P 		20
avr 11.5
(-2.4) 		11.7
(-2.3) 		13.9
(-1.4) 		10
(-3) 		13.9
(-1.4) 		24.4
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182531_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13516
Sequence Type Exemplar sequence
Representative Public ID T06C12.5 NCBI
Target Description T06C12.5 /REP_DB=WormBase Gene ID /WP=CE16355 /TR=O18044 /GB=CAB03305.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T06C12.5 ENSEMBL cdna:known chromosome:CEL140:V:15871895:15873220:1 gene:T06C12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035462 5/11 Cross Hyb Matching Probes None
SNAP00000035463 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035477 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15871894-15873220(+) 100.0 100.0
Public Domain and Genome References
Ensembl T06C12.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T24570 hypothetical protein T06C12.5 - Caenorhabditis elegans 0.0
blast CAB03304 Hypothetical protein T06C12.4 [Caenorhabditis elegans] ref|NP_506963.1| T06C12.4 [Caenorhabditis elegans] 4.0E-66
blast AAB70966 Hypothetical protein C08E3.6 [Caenorhabditis elegans] ref|NP_494010.1| C08E3.6 [Caenorhabditis elegans] 3.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.5E-10
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.8E-10
Sequence
Target Sequence 
>C. ELEGANS:182531_AT
aaaatcacttacgcacgggatagttacagttgtaggattacttatcaaaatggagaagac
gaaagaaaggaaaaatttgtcggaggagagaattatgtagagttgtgcaacaatgatctc
aagttattgatggaaaatcgaacggttcaattgaaaacttttagtttcacagtttttgaa
tcagaagaagaaggcaatggattccgcgagaatcgcatcaaggatatcacgaaaattcta
aactccacaaagagcttgatgacaaaaactataaaatcgacgaatctatcgtttccggaa
ttcgcttctctgctttcaatcttcccggctaagaatctgcaaaaaataattttcgaagcg
ggatttcaacctacacattttggatacaagcagctcatgattgaaaattctcccgatttc
aaggaagctcgaatcgctgcgaagtatatggatcacgatagagaggacggaacatttttg
ttcgacgatgcatatgatgaagattctgaatatgaagaccgcgaaactagctatacaaca
catgacaagagagtatttcacgtcaccattcgcgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATCACTTACGCACGGGATAGTT 526 131 424 Antisense
GGATTCCGCGAGAATCGCATCAAGG 367 509 622 Antisense
ATCTATCGTTTCCGGAATTCGCTTC 618 31 707 Antisense
CAATCTTCCCGGCTAAGAATCTGCA 213 181 740 Antisense
GAAGCGGGATTTCAACCTACACATT 640 325 778 Antisense
GCAGCTCATGATTGAAAATTCTCCC 609 313 813 Antisense
AAATTCTCCCGATTTCAAGGAAGCT 495 113 828 Antisense
AGGAAGCTCGAATCGCTGCGAAGTA 669 53 845 Antisense
GAAGACCGCGAAACTAGCTATACAA 448 339 937 Antisense
AAGAGAGTATTTCACGTCACCATTC 18 155 970 Antisense
TATTTCACGTCACCATTCGCGAAAA 503 661 977 Antisense
Sequence Source Affymetrix Proprietary Database