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[182530_at]

Description C06E2.7 /REP_DB=WormBase Gene ID /WP=CE03948 /TR=Q17720 /GB=AAA80414.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 22      6grp_cgc > 32      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 131.5
(1.6)
A 		54.9
(-2)
A 		33.1
(-3)
A 		162.8
(3)
P 		130
B 171.3
(3)
A 		49.2
(-1.7)
A 		16.3
(-3)
A 		83
(-0.4)
P 		155
C 115.4
(-0.2)
A 		49.2
(-2.1)
A 		20.2
(-3)
A 		221.5
(3)
P 		201
avr 139.4
(2.3) 		51.1
(-1.7) 		23.2
(-3) 		155.8
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 141.3
(3)
A 		83.5
(0.3)
A 		96.5
(0.9)
P 		50.9
(-1.2)
A 		78.8
(0.1)
A 		13.3
(-3)
A 		128
B 94.3
(3)
A 		89.9
(2.6)
A 		64.3
(0.2)
A 		51.3
(-1)
A 		75.4
(1.2)
A 		29.6
(-3)
A 		65
C 96.9
(-0.4)
A 		171
(3)
P 		93.4
(-0.5)
A 		64.2
(-1.8)
A 		38.5
(-3)
A 		39.3
(-3)
A 		133
avr 110.8
(2.7) 		114.8
(3) 		84.7
(0.9) 		55.5
(-1.1) 		64.2
(-0.5) 		27.4
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 47.9
(3)
A 		11.9
(-2.5)
A 		8.7
(-3)
A 		23.8
(-0.7)
P 		39
B 54.6
(3)
A 		12.2
(-2)
A 		3.8
(-3)
A 		17.7
(-1.4)
P 		51
C 38.2
(3)
A 		14.1
(-1.6)
A 		7
(-3)
A 		37.3
(2.8)
P 		31
avr 46.9
(3) 		12.7
(-2.1) 		6.5
(-3) 		26.3
(-0.1) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 26
(2.2)
A 		29.7
(3)
A 		21
(1)
P 		12.9
(-0.8)
A 		23.8
(1.7)
A 		3.2
(-3)
A 		27
B 32.8
(3)
A 		29.9
(2.2)
A 		15.6
(-1.7)
A 		13.6
(-2.3)
A 		30.6
(2.4)
A 		11
(-3)
A 		22
C 35.9
(0.5)
A 		52.2
(3)
P 		23.8
(-1.3)
A 		12.9
(-2.9)
A 		12.5
(-3)
A 		13.2
(-2.9)
A 		40
avr 31.6
(1.8) 		37.3
(3) 		20.1
(-0.7) 		13.1
(-2.1) 		22.3
(-0.2) 		9.1
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182530_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16358
Sequence Type Exemplar sequence
Representative Public ID C06E2.7 NCBI
Target Description C06E2.7 /REP_DB=WormBase Gene ID /WP=CE03948 /TR=Q17720 /GB=AAA80414.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077100
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000017257 ENSEMBL cdna:SNAP chromosome:CEL140:X:8867755:8869034:-1 None
GENEFINDER00000017265 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8867755:8869067:-1 None
C06E2.7 ENSEMBL cdna:known chromosome:CEL140:X:8867755:8869067:-1 gene:C06E2.7 None
NM_077100 NCBI Caenorhabditis elegans UBiquitin Conjugating enzyme family member (ubc-22) (ubc-22) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8867753-8869066(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ubc-22
Ensembl C06E2.7
Entrez Gene 182322 Entrez gene
SwissProt Q17720 EMBL-EBI
WormBase CE35385 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6464 protein modification inferred from electronic annotation QuickGO AmiGO
6512 ubiquitin cycle inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4840 ubiquitin conjugating enzyme activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA80414 Ubiquitin conjugating enzyme protein 22 [Caenorhabditis elegans] ref|NP_509501.2| UBiquitin Conjugating enzyme family member (ubc-22) [Caenorhabditis elegans] 1.0E-102
blast AAA80414 Ubiquitin conjugating enzyme protein 22 [Caenorhabditis elegans] ref|NP_509501.2| UBiquitin Conjugating enzyme family member (ubc-22) [Caenorhabditis elegans] 2.0E-99
blast AAA80414 Ubiquitin conjugating enzyme protein 22 [Caenorhabditis elegans] ref|NP_509501.2| UBiquitin Conjugating enzyme family member (ubc-22) [Caenorhabditis elegans] 1.0E-95
blast CAE69373 Hypothetical protein CBG15472 [Caenorhabditis briggsae] 1.0E-38
blast CAE69373 Hypothetical protein CBG15472 [Caenorhabditis briggsae] 5.0E-37
blast CAE69373 Hypothetical protein CBG15472 [Caenorhabditis briggsae] 1.0E-35
blast AAY52456 ubiquitin conjugating enzyme E2 [Caenorhabditis remanei] 8.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 3.8E-9
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 3.5E-14
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 3.8E-9
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 3.5E-14
Sequence
Target Sequence 
>C. ELEGANS:182530_AT
aaataacgtttcacatcgctggacccgctgacactccttatgagacaggtgtatttgagg
tggacctcacattcccagacaactatcctaatgcgctcccacaagtatgtcaaattacaa
atatgtatacccctttcatttttattccagatcaagttccaaactctcatttggaactgt
gcggtagagccaagcactgggcaagttcacatcgaaaattactcacggtacgctgtcatt
ttattaactgcaatttttgttctttatttcttttaagactcaatgtttcggaggcactgt
cttatattgaagatttatttcgatcaatcgaggtagacgaggaggtcatgttctataaaa
ctgcaagattttggacaacagaatttgctggaggacgcccgctcccagacgatgactggc
agaagaaaaaagtcgattctctgattgaaatgggattttctagactggaatcaattcttg
ctctgggtggtagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATAACGTTTCACATCGCTGGACC 310 117 101 Antisense
CCCGCTGACACTCCTTATGAGACAG 259 261 124 Antisense
TTGAGGTGGACCTCACATTCCCAGA 419 705 155 Antisense
CCCAGACAACTATCCTAATGCGCTC 653 255 174 Antisense
TAATGCGCTCCCACAAGTATGTCAA 526 635 189 Antisense
TATGTATACCCCTTTCATTTTTATT 697 653 222 Antisense
AACTCTCATTTGGAACTGTGCGGTA 195 141 262 Antisense
CAAGCACTGGGCAAGTTCACATCGA 222 185 291 Antisense
AAAATTACTCACGGTACGCTGTCAT 63 133 315 Antisense
AATGTTTCGGAGGCACTGTCTTATA 488 163 382 Antisense
ATCAATTCTTGCTCTGGGTGGTAGT 206 25 570 Antisense
Sequence Source Affymetrix Proprietary Database