[Home] | [Total List]

[182529_at]

Description C31E10.5 /REP_DB=WormBase Gene ID /WP=CE08505 /TR=Q93309 /GB=CAB01726.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 46      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 90      6grp_total > 46      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 280.8
(3)
P 		212.1
(-0.7)
P 		168
(-3)
P 		178.3
(-2.5)
P 		113
B 295.6
(3)
P 		187.7
(-2.6)
P 		179
(-3)
P 		204.4
(-1.7)
P 		117
C 246.8
(3)
P 		145.7
(-3)
P 		188.8
(-0.4)
P 		174.5
(-1.3)
P 		101
avr 274.4
(3) 		181.8
(-2.8) 		178.6
(-3) 		185.7
(-2.6) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 221.8
(3)
P 		200.9
(1.6)
P 		133.3
(-3)
P 		175.6
(-0.1)
P 		132.8
(-3)
P 		200.1
(1.5)
P 		89
B 249.4
(3)
P 		188.6
(-0.6)
P 		211.9
(0.8)
P 		161.3
(-2.2)
P 		147.1
(-3)
P 		195.7
(-0.1)
P 		102
C 158
(-0.5)
P 		182.4
(1.2)
P 		202.1
(2.6)
P 		125
(-2.8)
P 		121.6
(-3)
P 		208.2
(3)
P 		87
avr 209.7
(3) 		190.6
(1.5) 		182.4
(0.8) 		154
(-1.4) 		133.8
(-3) 		201.3
(2.3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 102.2
(3)
P 		46
(-1.4)
P 		43.9
(-1.6)
P 		26.1
(-3)
P 		76
B 94.3
(3)
P 		46.4
(-2.4)
P 		41.5
(-3)
P 		43.6
(-2.8)
P 		53
C 81.7
(3)
P 		41.9
(-1.6)
P 		65.8
(1.2)
P 		29.4
(-3)
P 		52
avr 92.7
(3) 		44.8
(-1.8) 		50.4
(-1.3) 		33
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 40.9
(-1.3)
P 		71.5
(3)
P 		29
(-3)
P 		44.5
(-0.8)
P 		40.1
(-1.4)
P 		48.7
(-0.2)
P 		43
B 86.8
(3)
P 		62.8
(-0.3)
P 		51.5
(-1.8)
P 		42.7
(-3)
P 		59.7
(-0.7)
P 		73
(1.1)
P 		44
C 58.6
(1.5)
P 		55.7
(1.1)
P 		51.4
(0.5)
P 		25.1
(-3)
P 		39.3
(-1.1)
P 		69.7
(3)
P 		45
avr 62.1
(2.6) 		63.3
(2.9) 		44
(-1.5) 		37.4
(-3) 		46.4
(-1) 		63.8
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182529_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17894
Sequence Type Exemplar sequence
Representative Public ID C31E10.5 NCBI
Target Description C31E10.5 /REP_DB=WormBase Gene ID /WP=CE08505 /TR=Q93309 /GB=CAB01726.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077932(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077932 NCBI Caenorhabditis elegans C31E10.5 (C31E10.5) mRNA, complete cds. 11/11 None
SNAP00000027027 ENSEMBL cdna:SNAP chromosome:CEL140:X:13991954:13995725:-1 11/11 None
GENEFINDER00000027035 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13991954:13995725:-1 11/11 None
C31E10.5 ENSEMBL cdna:known chromosome:CEL140:X:13991416:13995986:-1 gene:C31E10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13991953-13995986(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31E10.5
Entrez Gene 181508 Entrez gene
SwissProt Q93309 EMBL-EBI
WormBase CE08505 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01726 Hypothetical protein C31E10.5 [Caenorhabditis elegans] ref|NP_510333.1| C31E10.5 [Caenorhabditis elegans] 0.0
blast CAE63052 Hypothetical protein CBG07325 [Caenorhabditis briggsae] 6.0E-31
blast CAE63052 Hypothetical protein CBG07325 [Caenorhabditis briggsae] 7.0E-31
blast AAT81207 Hypothetical protein C16A11.2a [Caenorhabditis elegans] ref|NP_001021959.1| C16A11.2a [Caenorhabditis elegans] 3.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510333.1 1 56-78
C31E10.5 1 56-78
Sequence
Target Sequence 
>C. ELEGANS:182529_AT
gattctacgcttgtccgaagggatgactgtccgtattagtcgagcaatggccaatacatt
cggaaccagggaaagaaatgcaagaatcgataatatggaagattcccctgatctttgctc
cgattatgttgagttcaacgatgataaaattgtcgatgacatcattgccttaagcaatcg
aatcagcaaagtcgttcaggtgatcatgagtattccacttccggatgaatatcgaaagga
ggcaatgagctaccaacatctttttatgagctacgtagaagacgttctcaccaaattgac
tgactggtattggaaagcagacttgatgcagtatcatcgaattgaggagagaaaacgtct
ggagaagcggagatcagacatgcgcatcaaacaacgccaggaaatcaagaatgcacagct
cacacgaatcatattcgatgtaaaccaaactatccaagatgtgactcacgaactcaccac
gcaaaacattgttgctacgcagctccgcctcgatttttgtgaagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTACGCTTGTCCGAAGGGATG 191 429 1386 Antisense
GTCCGTATTAGTCGAGCAATGGCCA 229 475 1414 Antisense
ATGGAAGATTCCCCTGATCTTTGCT 694 51 1480 Antisense
CCTGATCTTTGCTCCGATTATGTTG 233 267 1492 Antisense
TGATCATGAGTATTCCACTTCCGGA 215 565 1586 Antisense
GAAGACGTTCTCACCAAATTGACTG 73 339 1663 Antisense
AGCGGAGATCAGACATGCGCATCAA 162 81 1751 Antisense
TGCACAGCTCACACGAATCATATTC 447 577 1797 Antisense
AGATGTGACTCACGAACTCACCACG 227 67 1842 Antisense
AAAACATTGTTGCTACGCAGCTCCG 299 131 1868 Antisense
GCTCCGCCTCGATTTTTGTGAAGCT 616 297 1887 Antisense
Sequence Source Affymetrix Proprietary Database