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[182528_at]

Description F14F9.6 /REP_DB=WormBase Gene ID /WP=CE09392 /TR=Q9GUC4 /GB=AAF98618.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 47      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 318
1 2 3 4 range
A 290.9
(3)
P 		38.4
(-2.8)
A 		60.4
(-2.3)
A 		30.7
(-3)
A 		260
B 328.4
(3)
P 		49.6
(-2.3)
A 		13
(-2.9)
A 		10.1
(-3)
A 		318
C 300.7
(3)
P 		54
(-2.5)
A 		30.5
(-3)
A 		43.3
(-2.7)
A 		270
avr 306.7
(3) 		47.3
(-2.6) 		34.6
(-2.9) 		28
(-3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 46.7
(-0.1)
A 		51.3
(0.2)
A 		85.2
(2.8)
A 		88.5
(3)
P 		8.3
(-3)
A 		41.4
(-0.5)
A 		80
B 41.3
(-3)
A 		46
(-2.6)
A 		108.7
(3)
A 		96.1
(1.9)
P 		58.5
(-1.5)
A 		41.8
(-3)
A 		67
C 62.8
(0.1)
A 		19.2
(-3)
A 		103.9
(3)
P 		51.3
(-0.7)
A 		28.1
(-2.4)
A 		27.8
(-2.4)
A 		85
avr 50.3
(-1.3) 		38.8
(-2.4) 		99.3
(3) 		78.6
(1.2) 		31.6
(-3) 		37
(-2.5) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 105.9
(3)
P 		8.3
(-2.8)
A 		15.8
(-2.3)
A 		4.5
(-3)
A 		101
B 104.7
(3)
P 		12.3
(-2.4)
A 		3
(-2.9)
A 		2.1
(-3)
A 		103
C 99.5
(3)
P 		15.5
(-2.5)
A 		10.6
(-2.8)
A 		7.3
(-3)
A 		92
avr 103.4
(3) 		12
(-2.6) 		9.8
(-2.7) 		4.6
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 8.6
(-1.2)
A 		18.3
(1.8)
A 		18.6
(1.9)
A 		22.4
(3)
P 		2.5
(-3)
A 		10.1
(-0.7)
A 		20
B 14.4
(-3)
A 		15.3
(-2.6)
A 		26.4
(3)
A 		25.4
(2.5)
P 		23.8
(1.7)
A 		15.6
(-2.4)
A 		12
C 23.3
(2.1)
A 		5.9
(-3)
A 		26.4
(3)
P 		10.3
(-1.7)
A 		9.1
(-2.1)
A 		9.3
(-2)
A 		21
avr 15.4
(-1.2) 		13.2
(-2.3) 		23.8
(3) 		19.4
(0.8) 		11.8
(-3) 		11.7
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182528_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15501
Sequence Type Exemplar sequence
Representative Public ID F14F9.6 NCBI
Target Description F14F9.6 /REP_DB=WormBase Gene ID /WP=CE09392 /TR=Q9GUC4 /GB=AAF98618.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071977(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071977 NCBI Caenorhabditis elegans F14F9.6 (F14F9.6) mRNA, complete cds. 10/11 A 
SNAP00000039411 ENSEMBL cdna:SNAP chromosome:CEL140:V:5145992:5146303:-1 10/11 None
GENEFINDER00000039414 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5145992:5150277:-1 11/11 None
F14F9.6 ENSEMBL cdna:known chromosome:CEL140:V:5145992:5150277:-1 gene:F14F9.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5145991-5150277(-) 65.32 100.0
Public Domain and Genome References
Gene Title
Ensembl F14F9.6
Entrez Gene 184486 Entrez gene
SwissProt Q9GUC4 EMBL-EBI
WormBase CE36823 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast D89042 protein F14F9.6 [imported] - Caenorhabditis elegans 0.0
blast CAB03024 Hypothetical protein F30A10.7 [Caenorhabditis elegans] ref|NP_492520.1| F30A10.7 [Caenorhabditis elegans] 0.0
blast AAB66101 Hypothetical protein K02F6.1 [Caenorhabditis elegans] ref|NP_494296.1| K02F6.1 [Caenorhabditis elegans] 0.0
blast NP_504378 F14F9.6 [Caenorhabditis elegans] gb|AAF98618.3| Hypothetical protein F14F9.6 [Caenorhabditis elegans] 7.0E-72
blast AAB66101 Hypothetical protein K02F6.1 [Caenorhabditis elegans] ref|NP_494296.1| K02F6.1 [Caenorhabditis elegans] 2.0E-30
blast NP_504378 F14F9.6 [Caenorhabditis elegans] gb|AAF98618.3| Hypothetical protein F14F9.6 [Caenorhabditis elegans] 7.0E-30
blast D89042 protein F14F9.6 [imported] - Caenorhabditis elegans 1.0E-29
blast D89042 protein F14F9.6 [imported] - Caenorhabditis elegans 2.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.1E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504378.3 1 97-115
F14F9.6 1 97-115
SNAP00000039411 1 5-23
Sequence
Target Sequence 
>C. ELEGANS:182528_AT
tgtggacggaacaattataccccttttattcctgactattgtcactgttggaatatttgc
tgccccttttagacaagaatttgatattctggttggaggcaatggagattcgaatatgaa
agaatcagagacattttatattgaatacgattccgactctggttgtgattgtgtgaaaga
cactgactctccgctagcaggactggaagggcttgaactggaaggggacacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGACGGAACAATTATACCCCTT 345 543 2649 Antisense
CCCCTTTTATTCCTGACTATTGTCA 356 261 2668 Antisense
ATTCCTGACTATTGTCACTGTTGGA 148 9 2676 Antisense
ACTGTTGGAATATTTGCTGCCCCTT 419 97 2692 Antisense
ATTTGCTGCCCCTTTTAGACAAGAA 26 19 2703 Antisense
GATATTCTGGTTGGAGGCAATGGAG 607 425 2731 Antisense
GAATACGATTCCGACTCTGGTTGTG 119 327 2791 Antisense
GTGTGAAAGACACTGACTCTCCGCT 362 487 2819 Antisense
ACTCTCCGCTAGCAGGACTGGAAGG 626 99 2834 Antisense
GCAGGACTGGAAGGGCTTGAACTGG 296 311 2845 Antisense
GGGCTTGAACTGGAAGGGGACACGT 312 487 2857 Antisense
Sequence Source Affymetrix Proprietary Database