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[182526_at] 7TM chemoreceptor, srab family

Description C36C5.2 /REP_DB=WormBase Gene ID /WP=CE08591 /TR=O16412 /GB=AAB65926.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 02      6grp_cgc > 50      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 29
(-3)
A 		41.2
(-2.1)
A 		28.6
(-3)
A 		111.7
(3)
P 		83
B 24.7
(-1.3)
A 		13.4
(-2.2)
A 		3.8
(-3)
A 		78.2
(3)
P 		74
C 25.5
(-1.1)
A 		15.9
(-3)
A 		33.4
(0.5)
A 		45.7
(3)
A 		30
avr 26.4
(-2.5) 		23.5
(-2.8) 		21.9
(-3) 		78.5
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 7.3
(-1.3)
A 		3.6
(-2.7)
A 		12.5
(0.6)
A 		17.3
(2.3)
A 		19.1
(3)
A 		2.8
(-3)
A 		16
B 26.6
(3)
A 		4.6
(-2.2)
A 		13.7
(-0)
A 		4.5
(-2.2)
A 		20.8
(1.6)
A 		1.1
(-3)
A 		26
C 16.6
(-0.4)
A 		32.4
(2.3)
A 		4.2
(-2.5)
A 		36.8
(3)
A 		1.2
(-3)
A 		1.1
(-3)
A 		36
avr 16.8
(2.1) 		13.5
(1) 		10.1
(-0.2) 		19.5
(3) 		13.7
(1) 		1.7
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.5
(-1)
A 		9
(-2)
A 		7.5
(-3)
A 		16.3
(3)
P 		9
B 7.9
(-0.3)
A 		3.3
(-2.1)
A 		0.9
(-3)
A 		16.7
(3)
P 		16
C 8.5
(0.3)
A 		4.6
(-3)
A 		11.6
(3)
A 		7.7
(-0.3)
A 		7
avr 9
(-0.5) 		5.6
(-3) 		6.7
(-2.2) 		13.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.3
(-2.3)
A 		1.3
(-2.3)
A 		2.7
(-0.6)
A 		4.4
(1.4)
A 		5.8
(3)
A 		0.7
(-3)
A 		5
B 9.3
(3)
A 		1.5
(-2.3)
A 		3.3
(-1)
A 		1.2
(-2.5)
A 		8.5
(2.5)
A 		0.4
(-3)
A 		9
C 6.1
(0.6)
A 		9.9
(3)
A 		1.1
(-2.6)
A 		7.4
(1.4)
A 		0.4
(-3)
A 		0.4
(-3)
A 		10
avr 5.6
(3) 		4.2
(1.4) 		2.4
(-0.8) 		4.3
(1.5) 		4.9
(2.2) 		0.5
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182526_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15475
Sequence Type Exemplar sequence
Representative Public ID C36C5.2 NCBI
Target Description C36C5.2 /REP_DB=WormBase Gene ID /WP=CE08591 /TR=O16412 /GB=AAB65926.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071474(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071474 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-8) (srab-8) mRNA, complete cds. 11/11 None
GENEFINDER00000036674 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3176611:3178428:1 11/11 None
C36C5.2 ENSEMBL cdna:known chromosome:CEL140:V:3176288:3177805:1 gene:C36C5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3176287-3177805(+) 97.18 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srab family
Gene Symbol srab-8
Ensembl C36C5.2
Entrez Gene 183258 Entrez gene
SwissProt O16412 EMBL-EBI
WormBase CE08591 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503875 Serpentine Receptor, class AB (class A-like) family member (srab-8) [Caenorhabditis elegans] gb|AAB65926.1| Serpentine receptor, class ab (class a-like) protein 8 [Caenorhabditis elegans] 1.0E-175
blast AAB37596 Serpentine receptor, class ab (class a-like) protein 22 [Caenorhabditis elegans] ref|NP_503960.2| Serpentine Receptor, class AB (class A-like) family member (srab-22) [Caenorhabditis elegans] 1.0E-148
blast AAB37595 Serpentine receptor, class ab (class a-like) protein 21 [Caenorhabditis elegans] ref|NP_503959.2| Serpentine Receptor, class AB (class A-like) family member (srab-21) [Caenorhabditis elegans] 1.0E-142
blast NP_503875 Serpentine Receptor, class AB (class A-like) family member (srab-8) [Caenorhabditis elegans] gb|AAB65926.1| Serpentine receptor, class ab (class a-like) protein 8 [Caenorhabditis elegans] 1.0E-124
blast AAB37596 Serpentine receptor, class ab (class a-like) protein 22 [Caenorhabditis elegans] ref|NP_503960.2| Serpentine Receptor, class AB (class A-like) family member (srab-22) [Caenorhabditis elegans] 1.0E-106
blast AAB37595 Serpentine receptor, class ab (class a-like) protein 21 [Caenorhabditis elegans] ref|NP_503959.2| Serpentine Receptor, class AB (class A-like) family member (srab-21) [Caenorhabditis elegans] 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503875.1 7 24-46,53-75,110-129,142-164,184-206,247-269,274-296
C36C5.2 7 24-46,53-75,110-129,142-164,184-206,247-269,274-296
GENEFINDER00000036674 5 65-84,97-119,139-161,202-224,229-251
Sequence
Target Sequence 
>C. ELEGANS:182526_AT
ggtacatcgccacagttagatctacaagttatgagcattccggatgcacatttggtgtac
taatggcgatattgcaactttcaataggatttttctcaacagctttcacattttcaagct
tttcatttactgatccttctatgaattattgtattgcttttaaaattggtatatttggca
gcgctgaagtaataaatttggtgggagtcgcatctcaaattattggaagagtactgtttg
agtatatgtttcggaagaatgagaagcttcgagccaaactattgatgtccaccctttcaa
atcgatactcactggagcaaaacttgaaatctatgagaacactaaaagtatttgccaact
tacaatcgatttttctcactcttcagatgactatttttattataattttttatctcggtc
tagcgattgaaaaaactacatatatcgctttgatcgaattgaacgctggatatccaatat
atgccgttgtttctattcttattttgtttagaagagaacaattgaacaaggtgacgctcg
acaagtctttggaagctcacatttacgcggatcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTACATCGCCACAGTTAGATCTAC 369 499 392 Antisense
TTCCGGATGCACATTTGGTGTACTA 343 699 429 Antisense
GGATTTTTCTCAACAGCTTTCACAT 37 511 478 Antisense
AAGCTTTTCATTTACTGATCCTTCT 170 151 507 Antisense
AATTGGTATATTTGGCAGCGCTGAA 442 179 555 Antisense
AATTTGGTGGGAGTCGCATCTCAAA 563 173 586 Antisense
GAGCCAAACTATTGATGTCCACCCT 284 385 662 Antisense
TACAATCGATTTTTCTCACTCTTCA 518 641 752 Antisense
ATAATTTTTTATCTCGGTCTAGCGA 563 23 793 Antisense
AGGTGACGCTCGACAAGTCTTTGGA 14 57 920 Antisense
GAAGCTCACATTTACGCGGATCATA 1 343 943 Antisense
Sequence Source Affymetrix Proprietary Database