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[182525_at]

Description Y41C4A.5 /REP_DB=WormBase Gene ID /WP=CE20245 /TR=Q9U2I7 /GB=CAB63354.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 40      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 12.5
(-2.5)
A 		7.9
(-3)
A 		65.3
(3)
A 		10.4
(-2.7)
A 		57
B 19.6
(-2.3)
A 		14
(-3)
A 		65.4
(3)
A 		59.1
(2.3)
A 		51
C 14.9
(-3)
A 		36.9
(3)
A 		22.9
(-0.8)
A 		29.7
(1)
A 		22
avr 15.7
(-3) 		19.6
(-2.3) 		51.2
(3) 		33.1
(-0.1) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 11.5
(-3)
A 		22.1
(-1.8)
A 		37.8
(0.1)
A 		62.5
(3)
A 		24.5
(-1.5)
A 		25.3
(-1.4)
A 		51
B 11.2
(-2.2)
A 		37.8
(0.5)
A 		58.8
(2.7)
A 		3.8
(-3)
A 		62.1
(3)
A 		32.9
(-0)
A 		58
C 37.1
(-0.6)
A 		56.7
(1.8)
P 		66.1
(3)
A 		54.7
(1.6)
A 		42.3
(0)
A 		18.1
(-3)
A 		48
avr 19.9
(-3) 		38.9
(0.3) 		54.2
(3) 		40.3
(0.6) 		43
(1) 		25.4
(-2) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.6
(-1.8)
A 		1.7
(-2.9)
A 		17.1
(3)
A 		1.5
(-3)
A 		16
B 6.3
(-1.6)
A 		3.5
(-3)
A 		15.2
(3)
A 		12.6
(1.7)
A 		12
C 4.9
(-3)
A 		10.6
(3)
A 		8
(0.3)
A 		5
(-2.9)
A 		6
avr 5.3
(-3) 		5.3
(-3) 		13.4
(3) 		6.4
(-2.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 2.1
(-3)
A 		7.9
(-0.5)
A 		8.2
(-0.3)
A 		15.9
(3)
A 		7.4
(-0.7)
A 		6.2
(-1.2)
A 		14
B 3.9
(-2.3)
A 		12.6
(-0.1)
A 		14.3
(0.3)
A 		1
(-3)
A 		25.2
(3)
A 		12.3
(-0.2)
A 		24
C 13.8
(1.1)
A 		17.3
(3)
P 		16.8
(2.7)
A 		11
(-0.4)
A 		13.7
(1.1)
A 		6.1
(-3)
A 		11
avr 6.6
(-3) 		12.6
(1.1) 		13.1
(1.4) 		9.3
(-1.2) 		15.4
(3) 		8.2
(-1.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182525_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7751
Sequence Type Exemplar sequence
Representative Public ID Y41C4A.5 NCBI
Target Description Y41C4A.5 /REP_DB=WormBase Gene ID /WP=CE20245 /TR=Q9U2I7 /GB=CAB63354.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067113(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067113 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-84) (pqn-84) mRNA, complete cds. 11/11 None
GENEFINDER00000034911 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11696475:11702695:1 11/11 None
Y41C4A.5 ENSEMBL cdna:known chromosome:CEL140:III:11700161:11702732:1 gene:Y41C4A.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034885 5/11 Cross Hyb Matching Probes None
SNAP00000034886 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11700208-11702691(+) 99.91 99.91
Public Domain and Genome References
Gene Title
Gene Symbol pqn-84
Ensembl Y41C4A.5
Entrez Gene 176601 Entrez gene
SwissProt Q9U2I7 EMBL-EBI
WormBase CE33482 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63356 Hypothetical protein Y41C4A.7 [Caenorhabditis elegans] ref|NP_499513.2| Y41C4A.7 [Caenorhabditis elegans] 1.0E-131
blast CAB63354 Hypothetical protein Y41C4A.5 [Caenorhabditis elegans] ref|NP_499514.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-84) [Caenorhabditis elegans] 1.0E-100
blast CAB63354 Hypothetical protein Y41C4A.5 [Caenorhabditis elegans] ref|NP_499514.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-84) [Caenorhabditis elegans] 2.0E-95
blast CAE67681 Hypothetical protein CBG13244 [Caenorhabditis briggsae] 4.0E-63
blast CAE67680 Hypothetical protein CBG13243 [Caenorhabditis briggsae] 1.0E-49
blast CAE64407 Hypothetical protein CBG09099 [Caenorhabditis briggsae] 1.0E-24
Sequence
Target Sequence 
>C. ELEGANS:182525_AT
aaagcccagaatattatcgccgaggatccgaatggtggacaacttggaggcggcgagctg
gttgtcacgaacccgggaagtgtcgggtcagggagtgggaatagtggaaactccagtaac
aataacaatagctctggaaatagtaattatggaagtaataactctggatccggaaatggg
aactcaaattctggaaatggaaattctggaaacggcaacggaaataatgccggcaattct
ggcaatggtaatggaaattctaatggtaacaatggtaatggtagcaatggcaatggaaac
ggtaataatggaaacggaaataatggtaacaatgggaacggacacccccagtacccatac
cccgtgccaccacatggctactatcctccaggctacccatacccacccggatacccgtac
ccaccaccaggagcattttattacccgccaggaggcatcccgcaaaacggaatgaatgga
cagaatggtaatggacagccgaacattattgtgatcaactcgggcggtaataaaaagaga
aatcgtggaggtaatctccggccacagtttgatgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCCAGAATATTATCGCCGAGG 411 125 526 Antisense
ATCGCCGAGGATCCGAATGGTGGAC 118 37 541 Antisense
TGGTGGACAACTTGGAGGCGGCGAG 439 553 558 Antisense
GTTGTCACGAACCCGGGAAGTGTCG 591 437 586 Antisense
GGAAGTGTCGGGTCAGGGAGTGGGA 405 531 601 Antisense
TACCCACCACCAGGAGCATTTTATT 667 647 943 Antisense
CATTTTATTACCCGCCAGGAGGCAT 584 211 959 Antisense
CCAGGAGGCATCCCGCAAAACGGAA 226 271 973 Antisense
TATTGTGATCAACTCGGGCGGTAAT 173 665 1032 Antisense
ATCGTGGAGGTAATCTCCGGCCACA 271 31 1067 Antisense
AATCTCCGGCCACAGTTTGATGTTG 16 171 1078 Antisense
Sequence Source Affymetrix Proprietary Database