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[182524_s_at]

Description C06E2.5 /REP_DB=WormBase Gene ID /WP=CE03947 /TR=Q17719 /GB=AAA80413.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 59      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_total > 79      4grp_total > 34      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 173
(-3)
P 		172.9
(-3)
P 		192.7
(0.7)
P 		204.7
(3)
P 		32
B 120.4
(-1.7)
P 		182.3
(3)
P 		173.5
(2.3)
P 		102.6
(-3)
P 		80
C 165.3
(-3)
P 		236.9
(2)
P 		180.6
(-1.9)
P 		250.5
(3)
P 		85
avr 152.9
(-3) 		197.4
(3) 		182.3
(1) 		185.9
(1.4) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 237.2
(3)
P 		158.1
(-2.6)
A 		166.2
(-2)
P 		152.1
(-3)
P 		165
(-2.1)
P 		196.3
(0.1)
P 		85
B 158.7
(0.2)
P 		196.9
(3)
P 		155.4
(-0.1)
P 		115.4
(-3)
P 		172.4
(1.2)
P 		193.4
(2.7)
P 		82
C 135.1
(-3)
P 		198.4
(3)
P 		141.6
(-2.4)
M 		161.9
(-0.5)
P 		174.3
(0.7)
P 		196.8
(2.8)
P 		63
avr 177
(0.9) 		184.5
(1.7) 		154.4
(-1.7) 		143.1
(-3) 		170.6
(0.1) 		195.5
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 63
(3)
P 		37.5
(-1.6)
P 		50.4
(0.7)
P 		30
(-3)
P 		33
B 38.4
(1.3)
P 		45
(3)
P 		40.2
(1.8)
P 		21.9
(-3)
P 		23
C 54.7
(-0.1)
P 		68.1
(3)
P 		63
(1.8)
P 		42.2
(-3)
P 		26
avr 52
(3) 		50.2
(2.5) 		51.2
(2.8) 		31.4
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 43.7
(-0.8)
P 		56.2
(3)
A 		36.2
(-3)
P 		38.6
(-2.3)
P 		49.8
(1.1)
P 		47.8
(0.5)
P 		20
B 55.2
(0.6)
P 		65.5
(2)
P 		37.7
(-2)
P 		30.6
(-3)
P 		70.1
(2.7)
P 		72.1
(3)
P 		42
C 50.1
(0.2)
P 		60.5
(2)
P 		36
(-2.4)
M 		32.6
(-3)
P 		56.4
(1.3)
P 		65.9
(3)
P 		33
avr 49.7
(0.4) 		60.7
(2.7) 		36.6
(-2.4) 		33.9
(-3) 		58.8
(2.3) 		61.9
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182524_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16228
Sequence Type Exemplar sequence
Representative Public ID C06E2.5 NCBI
Target Description C06E2.5 /REP_DB=WormBase Gene ID /WP=CE03947 /TR=Q17719 /GB=AAA80413.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077099(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077099 NCBI Caenorhabditis elegans C06E2.5 (C06E2.5) mRNA, complete cds. 9/11 None
SNAP00000017253 ENSEMBL cdna:SNAP chromosome:CEL140:X:8857275:8857891:-1 9/11 None
GENEFINDER00000017262 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8857275:8857891:-1 9/11 None
C06E2.5.2 ENSEMBL cdna:known chromosome:CEL140:X:8856995:8857891:-1 gene:C06E2.5 9/11 None
C06E2.5.1 ENSEMBL cdna:known chromosome:CEL140:X:8857058:8857891:-1 gene:C06E2.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8857273-8859048(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E2.5
Entrez Gene 181133 Entrez gene
SwissProt Q17719 EMBL-EBI
WormBase CE30595 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80413 Hypothetical protein C06E2.5 [Caenorhabditis elegans] ref|NP_509500.2| C06E2.5 [Caenorhabditis elegans] 2.0E-57
Sequence
Target Sequence 
>C. ELEGANS:182524_S_AT
gcattctatgaactgccagcttccaaagagactatgcaaatctcttttttcattctgacg
atgcctcatttagcaagcaccatgaacccgtttgatgaacttatgggagttccaatcaac
tctttgcttcgtcttgctcttgaaaagcgagcaaaagctgttgaagaccgatgccaagat
ctgcgcttccggaccactaacaccaagtttgccatcacactccaaagctatatcagaaga
agaaacgagtttatccggaggatgagagttcatgagatgagagaacaggcagaagctggg
ccaagcgagattgtgcagcagcctagcaatgcagtcggagccacagaggagccagccgca
aaacgggccagaacggacacaccggaaccaaataaagagaatacaactgaagttcctcgc
agaacattcaaaatcccgaacatcttgaagcgatcccatatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTCTATGAACTGCCAGCTTCCA 637 307 64 Antisense
TCATTCTGACGATGCCTCATTTAGC 188 619 113 Antisense
TTTGCTTCGTCTTGCTCTTGAAAAG 582 667 186 Antisense
AAGACCGATGCCAAGATCTGCGCTT 566 153 227 Antisense
GGACCACTAACACCAAGTTTGCCAT 129 523 254 Antisense
TGCCATCACACTCCAAAGCTATATC 637 585 273 Antisense
GGGCCAAGCGAGATTGTGCAGCAGC 67 493 361 Antisense
GCAGCAGCCTAGCAATGCAGTCGGA 594 313 378 Antisense
TGCAGTCGGAGCCACAGAGGAGCCA 337 577 393 Antisense
GCCAGAACGGACACACCGGAACCAA 619 263 430 Antisense
GAACATCTTGAAGCGATCCCATATG 120 351 501 Antisense
Sequence Source Affymetrix Proprietary Database