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[182523_at]

Description C25G6.1 /REP_DB=WormBase Gene ID /WP=CE04082 /TR=Q18180 /GB=AAA82358.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 44      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 186.9
(3)
A 		148
(1.2)
A 		129.9
(0.4)
A 		56.2
(-3)
A 		131
B 181.4
(0.7)
A 		248.9
(3)
A 		139.9
(-0.8)
A 		75.3
(-3)
A 		174
C 224.8
(3)
A 		200.5
(1.5)
A 		126.9
(-3)
A 		153
(-1.4)
A 		98
avr 197.7
(2.9) 		199.1
(3) 		132.2
(-0.8) 		94.8
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 253.9
(3)
A 		186.7
(0.9)
A 		177.4
(0.6)
A 		193.1
(1.1)
A 		81.8
(-2.4)
A 		64.3
(-3)
A 		190
B 188.8
(3)
A 		135.5
(0.8)
A 		171.7
(2.3)
A 		139.3
(1)
A 		111.5
(-0.2)
A 		42.8
(-3)
A 		146
C 214.5
(3)
A 		115.6
(-0.8)
A 		178.7
(1.6)
A 		108.8
(-1.1)
A 		91.6
(-1.7)
A 		59.1
(-3)
A 		155
avr 219.1
(3) 		145.9
(0.3) 		175.9
(1.4) 		147.1
(0.4) 		95
(-1.5) 		55.4
(-3) 		164
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 68
(3)
A 		32.1
(-0.6)
A 		34
(-0.4)
A 		8.2
(-3)
A 		60
B 57.9
(2.5)
A 		61.5
(3)
A 		32.4
(-0.8)
A 		16.1
(-3)
A 		45
C 74.4
(3)
A 		57.6
(0.9)
A 		44.2
(-0.7)
A 		25.8
(-3)
A 		49
avr 66.8
(3) 		50.4
(1) 		36.9
(-0.6) 		16.7
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 46.8
(0.7)
A 		66.4
(3)
A 		38.6
(-0.3)
A 		49
(0.9)
A 		24.7
(-1.9)
A 		15.7
(-3)
A 		51
B 65.7
(3)
A 		45.1
(0.5)
A 		41.7
(0.1)
A 		36.9
(-0.5)
A 		45.3
(0.5)
A 		16
(-3)
A 		50
C 79.5
(3)
A 		35.3
(-1.4)
A 		45.5
(-0.4)
A 		21.9
(-2.8)
A 		29.6
(-2)
A 		19.8
(-3)
A 		60
avr 64
(3) 		48.9
(1.1) 		41.9
(0.2) 		35.9
(-0.6) 		33.2
(-0.9) 		17.2
(-3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182523_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18250
Sequence Type Exemplar sequence
Representative Public ID C25G6.1 NCBI
Target Description C25G6.1 /REP_DB=WormBase Gene ID /WP=CE04082 /TR=Q18180 /GB=AAA82358.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075834 NCBI Caenorhabditis elegans C25G6.1 (C25G6.1) mRNA, complete cds. 11/11 None
C25G6.1 ENSEMBL cdna:known chromosome:CEL140:X:1269729:1272317:1 gene:C25G6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031329 7/11 Cross Hyb Matching Probes None
GENEFINDER00000031330 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1269728-1272317(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25G6.1
Entrez Gene 182918 Entrez gene
SwissProt Q18180 EMBL-EBI
WormBase CE04082 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82358 Hypothetical protein C25G6.1 [Caenorhabditis elegans] ref|NP_508235.1| C25G6.1 [Caenorhabditis elegans] 1.0E-111
blast CAE65411 Hypothetical protein CBG10363 [Caenorhabditis briggsae] 5.0E-29
blast AAA68748 Hypothetical protein F35D11.1 [Caenorhabditis elegans] ref|NP_494818.1| F35D11.1 [Caenorhabditis elegans] 6.0E-10
Sequence
Target Sequence 
>C. ELEGANS:182523_AT
ggtgttgctcattattgcccaattacgggtgtcatttgtaaacgaagccaatctcaaaaa
gaacaagtgctctcaactgctaccaatgcaatggatggcatggggattatccgttgcgtt
ctcaaaaatttcagatactcaactgctgccacctgtgacaacaggaatgatcaatgtcaa
actactcagtactgcgtgaaaatcatcgacccaatgtctcccggagtgaactacgtgacc
ttcaaatccgactgcttctaccaaactcaaatccaagtgaacccgacaaacttgagttat
atccaaggaaaaacgtgcttcccatatcaagatggatcggctccagtcaaaaggtgggta
tttgatttttgtgttgttcagccagcttgctgccgcccagttttaggccgctgtaggcca
agctgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGTTGCTCATTATTGCCCAATTA 140 501 34 Antisense
TGCTCTCAACTGCTACCAATGCAAT 298 581 101 Antisense
GGATTATCCGTTGCGTTCTCAAAAA 48 507 137 Antisense
TTTCAGATACTCAACTGCTGCCACC 592 671 162 Antisense
AACTGCTGCCACCTGTGACAACAGG 632 141 174 Antisense
GAAAATCATCGACCCAATGTCTCCC 540 353 231 Antisense
GTCTCCCGGAGTGAACTACGTGACC 415 469 249 Antisense
CTACGTGACCTTCAAATCCGACTGC 234 225 264 Antisense
CTGCTTCTACCAAACTCAAATCCAA 596 237 285 Antisense
GAAAAACGTGCTTCCCATATCAAGA 150 355 341 Antisense
TAGGCCGCTGTAGGCCAAGCTGCAG 390 651 437 Antisense
Sequence Source Affymetrix Proprietary Database