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[182522_at]

Description Y17D7B.5 /REP_DB=WormBase Gene ID /WP=CE16594 /TR=O62405 /GB=CAA16302.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 44.1
(0.7)
A 		26.5
(-1.1)
A 		8
(-3)
A 		66.5
(3)
M 		59
B 38.8
(-0.4)
A 		69.8
(3)
A 		33.4
(-1)
A 		14.7
(-3)
A 		55
C 24.9
(-1.7)
A 		8.8
(-2.6)
A 		2.2
(-3)
A 		107.4
(3)
A 		105
avr 35.9
(-0.3) 		35
(-0.5) 		14.5
(-3) 		62.9
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 36.7
(1.4)
A 		17.6
(-3)
A 		19.1
(-2.7)
A 		32.6
(0.4)
A 		40.6
(2.2)
P 		43.9
(3)
A 		26
B 21.9
(0.5)
A 		8.4
(-3)
A 		11.2
(-2.3)
A 		31.7
(3)
A 		12.8
(-1.9)
A 		28.8
(2.3)
A 		23
C 8.2
(-3)
A 		26.7
(-1.3)
A 		9.7
(-2.9)
A 		73.7
(3)
A 		18.1
(-2.1)
M 		20.7
(-1.9)
A 		66
avr 22.3
(-1.3) 		17.6
(-2.2) 		13.3
(-3) 		46
(3) 		23.8
(-1.1) 		31.1
(0.3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 16.1
(3)
A 		5.7
(-1.5)
A 		2.1
(-3)
A 		9.7
(0.3)
M 		14
B 12.4
(1)
A 		17.2
(3)
A 		7.7
(-1)
A 		3.1
(-3)
A 		14
C 8.2
(-0.4)
A 		2.5
(-2.4)
A 		0.8
(-3)
A 		18.1
(3)
A 		17
avr 12.2
(3) 		8.5
(0.4) 		3.5
(-3) 		10.3
(1.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.8
(-1.1)
A 		6.3
(-1.4)
A 		4.2
(-3)
A 		8.3
(0.1)
A 		12.2
(3)
P 		10.7
(1.9)
A 		8
B 7.6
(0.7)
A 		2.8
(-2.9)
A 		2.7
(-3)
A 		8.4
(1.3)
A 		5.2
(-1.1)
A 		10.7
(3)
A 		8
C 3
(-2.8)
A 		8.1
(-0.3)
A 		2.5
(-3)
A 		14.8
(3)
A 		5.8
(-1.4)
M 		6.9
(-0.9)
A 		12
avr 5.8
(-0.8) 		5.7
(-0.9) 		3.1
(-3) 		10.5
(3) 		7.7
(0.7) 		9.4
(2.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182522_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13902
Sequence Type Exemplar sequence
Representative Public ID Y17D7B.5 NCBI
Target Description Y17D7B.5 /REP_DB=WormBase Gene ID /WP=CE16594 /TR=O62405 /GB=CAA16302.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075266(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075266 NCBI Caenorhabditis elegans Y17D7B.5 (Y17D7B.5) mRNA, complete cds. 11/11 None
SNAP00000003520 ENSEMBL cdna:SNAP chromosome:CEL140:V:18777800:18778285:1 11/11 None
Y17D7B.5 ENSEMBL cdna:known chromosome:CEL140:V:18777800:18778285:1 gene:Y17D7B.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003519 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003525 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18777799-18778285(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17D7B.5
Entrez Gene 189449 Entrez gene
SwissProt O62405 EMBL-EBI
WormBase CE16594 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16302 Hypothetical protein Y17D7B.5 [Caenorhabditis elegans] ref|NP_507667.1| Y17D7B.5 [Caenorhabditis elegans] 1.0E-76
blast CAB04093 Hypothetical protein F11D11.1 [Caenorhabditis elegans] ref|NP_507665.1| F11D11.1 [Caenorhabditis elegans] 2.0E-33
blast CAA16303 Hypothetical protein Y17D7B.6 [Caenorhabditis elegans] ref|NP_507666.1| Y17D7B.6 [Caenorhabditis elegans] 3.0E-32
Sequence
Target Sequence 
>C. ELEGANS:182522_AT
cttctatcttcctattttattcttgaattattggtgcctgaagccaattgtcaaactcga
atggttctaatttatggagggattacaagtagcatgacaagtactactacaacgtttgag
actgtagaagattgcaaaaatgggtgtttcgaaaaggaggattgtattatgatgtatttt
atttttgaaaagtgccgtttctatagttatgcaactaacggttcacctttttctataaca
gagcaatcaaaaagacaaggggcctacgtggcaattaagacggatgcctccaacatcccg
aataacacgtgcccggccacttttaccaatatcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTATCTTCCTATTTTATTCTTG 398 221 28 Antisense
TTATTCTTGAATTATTGGTGCCTGA 317 677 44 Antisense
GGTGCCTGAAGCCAATTGTCAAACT 352 501 60 Antisense
GTCAAACTCGAATGGTTCTAATTTA 655 459 77 Antisense
GTACTACTACAACGTTTGAGACTGT 99 461 128 Antisense
GTGCCGTTTCTATAGTTATGCAACT 257 479 219 Antisense
TGCAACTAACGGTTCACCTTTTTCT 111 557 237 Antisense
GGTTCACCTTTTTCTATAACAGAGC 46 507 247 Antisense
AAGACAAGGGGCCTACGTGGCAATT 336 151 279 Antisense
GCAATTAAGACGGATGCCTCCAACA 678 321 298 Antisense
CCCGGCCACTTTTACCAATATCAAG 65 257 339 Antisense
Sequence Source Affymetrix Proprietary Database