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[182520_s_at]

Description R09E10.6 /REP_DB=WormBase Gene ID /WP=CE06288 /TR=Q21871 /GB=CAA94297.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 53.6
(-0.1)
A 		36.3
(-3)
A 		53.3
(-0.1)
A 		71.9
(3)
A 		36
B 48.3
(-3)
A 		86.9
(2.7)
A 		89.1
(3)
A 		71
(0.3)
A 		41
C 52.1
(-3)
A 		89.9
(1.4)
A 		53.5
(-2.8)
A 		104.2
(3)
A 		52
avr 51.3
(-3) 		71
(0.8) 		65.3
(-0.3) 		82.4
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1279
1 2 3 4 5 6 range
A 45.3
(-3)
A 		59.7
(-2.9)
A 		67.4
(-2.9)
A 		122.8
(-2.6)
A 		565.9
(-0.6)
P 		1320.6
(3)
P 		1275
B 41.6
(-3)
A 		52.7
(-2.9)
A 		82.2
(-2.7)
A 		122.2
(-2.5)
P 		647.7
(1.1)
P 		924.6
(3)
P 		883
C 78.3
(-2.8)
A 		89.9
(-2.7)
A 		53.1
(-3)
A 		122.5
(-2.5)
P 		608.3
(0.8)
P 		918.5
(3)
P 		865
avr 55.1
(-3) 		67.4
(-2.9) 		67.6
(-2.9) 		122.5
(-2.6) 		607.3
(0.3) 		1054.6
(3) 		1000
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.5
(3)
A 		7.9
(-3)
A 		13.9
(0.1)
A 		10.5
(-1.7)
A 		12
B 15.4
(-2.7)
A 		21.5
(3)
A 		20.6
(2.2)
A 		15.1
(-3)
A 		6
C 17.3
(-3)
A 		25.9
(3)
A 		18.6
(-2.1)
A 		17.6
(-2.8)
A 		9
avr 17.4
(1.5) 		18.4
(3) 		17.7
(2) 		14.4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 8.3
(-3)
A 		21.2
(-2.8)
A 		14.7
(-2.9)
A 		31.1
(-2.6)
A 		170.8
(0.1)
P 		321.5
(3)
P 		313
B 14.5
(-3)
A 		17.5
(-2.9)
A 		20
(-2.9)
A 		32.4
(-2.7)
P 		263.1
(1.5)
P 		344.8
(3)
P 		330
C 29
(-2.7)
A 		27.4
(-2.7)
A 		13.5
(-3)
A 		24.6
(-2.8)
P 		196.8
(0.7)
P 		307.5
(3)
P 		294
avr 17.3
(-3) 		22
(-2.9) 		16.1
(-3) 		29.4
(-2.7) 		210.2
(0.8) 		324.6
(3) 		309
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182520_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9449
Sequence Type Exemplar sequence
Representative Public ID R09E10.6 NCBI
Target Description R09E10.6 /REP_DB=WormBase Gene ID /WP=CE06288 /TR=Q21871 /GB=CAA94297.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069488(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069488 NCBI Caenorhabditis elegans R09E10.6 (R09E10.6) mRNA, complete cds. 11/11 None
SNAP00000005967 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10293008:10294056:-1 11/11 None
GENEFINDER00000005985 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10293033:10294056:-1 11/11 None
R09E10.6 ENSEMBL cdna:known chromosome:CEL140:IV:10293008:10294098:-1 gene:R09E10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10293013-10294062(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09E10.6
Entrez Gene 177916 Entrez gene
SwissProt Q21871 EMBL-EBI
WormBase CE06288 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94297 Hypothetical protein R09E10.6 [Caenorhabditis elegans] ref|NP_501889.1| R09E10.6 [Caenorhabditis elegans] 1.0E-162
blast CAA94297 Hypothetical protein R09E10.6 [Caenorhabditis elegans] ref|NP_501889.1| R09E10.6 [Caenorhabditis elegans] 1.0E-156
blast CAE60722 Hypothetical protein CBG04400 [Caenorhabditis briggsae] 1.0E-74
blast CAE60722 Hypothetical protein CBG04400 [Caenorhabditis briggsae] 4.0E-69
blast CAB02728 Hypothetical protein C15C6.2b [Caenorhabditis elegans] ref|NP_493080.1| C15C6.2b [Caenorhabditis elegans] 1.0E-34
Sequence
Target Sequence 
>C. ELEGANS:182520_S_AT
cacgtcaaagtccgtcttccacgtggaaatgttcatatgttccttcgcgacgacgacatc
tcaaaatggacggccgctcttctcgaggctcacgtctctttccgtccaacagctgccgct
cgagttgttgcaaagccacgtcaacaaccatcgaagaacgttgagacgatgactgcaatt
gaaccagtcgaagtgatggattctccaacatcaccagtgacttcttcaaatagtggactt
atcactgttctggaaagaggagtttcttctgaagacacattgattccttctgttcgtcgt
ggtgtcattccagtcaacactcttcgttaccaaatagaaaagcatctcgagatgtgtact
ccagcttctgaacaattgtcaaagagttcggatcccaacatctcctcgatgtacgttttc
catc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGTCAAAGTCCGTCTTCCACGTG 536 197 343 Antisense
AAATGTTCATATGTTCCTTCGCGAC 132 121 369 Antisense
CCTTCGCGACGACGACATCTCAAAA 635 269 384 Antisense
CATCTCAAAATGGACGGCCGCTCTT 103 205 399 Antisense
GCTGCCGCTCGAGTTGTTGCAAAGC 21 299 454 Antisense
TGGATTCTCCAACATCACCAGTGAC 351 551 539 Antisense
TTCGTCGTGGTGTCATTCCAGTCAA 610 695 635 Antisense
CAGTCAACACTCTTCGTTACCAAAT 596 207 653 Antisense
TCGAGATGTGTACTCCAGCTTCTGA 348 601 689 Antisense
AAAGAGTTCGGATCCCAACATCTCC 604 121 723 Antisense
ATCTCCTCGATGTACGTTTTCCATC 438 29 742 Antisense
Sequence Source Affymetrix Proprietary Database