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[182519_at]

Description F20D6.5 /REP_DB=WormBase Gene ID /WP=CE07110 /TR=Q19647 /GB=AAB37050.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_highest_8_8 > 06      4grp_high_8_8 > 21      6grp_highest_nonorm > 90      6grp_total > 88      4grp_total > 18      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 72.3
(-3)
P 		240.8
(1.6)
P 		162.3
(-0.5)
P 		290.5
(3)
P 		218
B 123.2
(-2.8)
P 		223
(-0.5)
P 		116.1
(-3)
P 		374.6
(3)
P 		259
C 135.3
(-3)
P 		225.7
(-1.4)
P 		192.9
(-2)
P 		473
(3)
P 		338
avr 110.3
(-3) 		229.8
(-0.3) 		157.1
(-2) 		379.4
(3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 121.6
(-1.8)
P 		152
(-0.4)
P 		185
(1.2)
P 		96.7
(-3)
P 		168.5
(0.4)
P 		224.2
(3)
P 		128
B 134.4
(-2)
P 		134.3
(-2)
P 		195.9
(-0.2)
P 		100.7
(-3)
P 		214.9
(0.4)
P 		302.9
(3)
P 		202
C 109.2
(-3)
P 		164.8
(0.5)
P 		125.5
(-2)
P 		143.7
(-0.9)
P 		205.8
(3)
P 		196.2
(2.4)
P 		97
avr 121.7
(-2.6) 		150.4
(-1.3) 		168.8
(-0.4) 		113.7
(-3) 		196.4
(0.9) 		241.1
(3) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 26.3
(-3)
P 		52.3
(3)
P 		42.4
(0.7)
P 		42.5
(0.7)
P 		26
B 39.3
(-1.6)
P 		55.1
(0.2)
P 		26.9
(-3)
P 		79.8
(3)
P 		53
C 44.8
(-3)
P 		64.9
(0.4)
P 		67.2
(0.8)
P 		79.8
(3)
P 		35
avr 36.8
(-3) 		57.4
(1) 		45.5
(-1.3) 		67.4
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 22.4
(-3)
P 		54.1
(2.9)
P 		40.3
(0.3)
P 		24.5
(-2.6)
P 		50.8
(2.3)
P 		54.6
(3)
P 		32
B 46.8
(-1.6)
P 		44.7
(-1.7)
P 		47.6
(-1.5)
P 		26.7
(-3)
P 		87.3
(1.2)
P 		113
(3)
P 		86
C 40.5
(-1.2)
P 		50.3
(0.4)
P 		32
(-2.5)
P 		28.9
(-3)
P 		66.6
(3)
P 		65.7
(2.9)
P 		38
avr 36.6
(-1.8) 		49.7
(-0.3) 		40
(-1.4) 		26.7
(-3) 		68.2
(1.9) 		77.8
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182519_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11804
Sequence Type Exemplar sequence
Representative Public ID F20D6.5 NCBI
Target Description F20D6.5 /REP_DB=WormBase Gene ID /WP=CE07110 /TR=Q19647 /GB=AAB37050.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072703(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072703 NCBI Caenorhabditis elegans F20D6.5 (F20D6.5) mRNA, complete cds. 11/11 None
SNAP00000033158 ENSEMBL cdna:SNAP chromosome:CEL140:V:8166151:8169022:1 11/11 None
GENEFINDER00000033169 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8162544:8167778:1 11/11 None
F20D6.5 ENSEMBL cdna:known chromosome:CEL140:V:8164588:8167778:1 gene:F20D6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8164588-8167870(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20D6.5
Entrez Gene 184724 Entrez gene
SwissProt Q19647 EMBL-EBI
WormBase CE30757 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAM29675 Hypothetical protein F20D6.5 [Caenorhabditis elegans] ref|NP_505104.2| F20D6.5 [Caenorhabditis elegans] 0.0
blast T16116 hypothetical protein F20D6.5 - Caenorhabditis elegans 0.0
blast CAE66117 Hypothetical protein CBG11337 [Caenorhabditis briggsae] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.1E-6
Sequence
Target Sequence 
>C. ELEGANS:182519_AT
ctggtttacaactttattcacgcaacagaataagaacacatttattggaaactggaaagg
agatttatcagattggctaccatcaaaagtggcgcgggatacaatcaaagaattagatgg
tctgctgacaccagaaattttcttgaaattgaacaacgattgccaacttacgggtgtcca
agaagtcctttgccatggggactactcctttcacaaccttttatatgaaaaacattgcga
tggctcatataaattccgagctattgttgactttcagagtgtaaattggggaaatgcagc
acaggatttgtcacgattgtttgtcactgcaatgagcggcaaagaccgtcgagattctga
ggatcgcttgttaaagatttactacgatgaattgatcaaagtttcaaagggaaatgtggc
accgtttacatgggaacagttgaaacaaagttatacaagattttttcaactacacgcagc
gatcgtgtgtactgtgacacccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGTTTACAACTTTATTCACGCAA 219 241 516 Antisense
GGCTACCATCAAAAGTGGCGCGGGA 434 537 590 Antisense
ACGATTGCCAACTTACGGGTGTCCA 193 93 671 Antisense
GTCCAAGAAGTCCTTTGCCATGGGG 620 477 691 Antisense
TACTCCTTTCACAACCTTTTATATG 665 645 718 Antisense
TCCGAGCTATTGTTGACTTTCAGAG 684 595 770 Antisense
TTTGTCACGATTGTTTGTCACTGCA 462 667 822 Antisense
GACCGTCGAGATTCTGAGGATCGCT 214 383 859 Antisense
GTGGCACCGTTTACATGGGAACAGT 326 491 931 Antisense
GATTTTTTCAACTACACGCAGCGAT 505 429 974 Antisense
GATCGTGTGTACTGTGACACCCGGA 379 417 996 Antisense
Sequence Source Affymetrix Proprietary Database