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[182518_s_at]

Description C18G1.9 /REP_DB=WormBase Gene ID /WP=CE17425 /TR=O61923 /GB=AAC17761.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 4
(-3)
A 		16.3
(-1.3)
A 		5.2
(-2.8)
A 		46.8
(3)
A 		43
B 1.6
(-3)
A 		4.5
(2.8)
A 		1.6
(-3)
A 		4.6
(3)
A 		3
C 9.6
(-2.7)
A 		27.3
(2.6)
A 		8.6
(-3)
A 		28.7
(3)
A 		20
avr 5.1
(-3) 		16
(0) 		5.1
(-3) 		26.7
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 4
(-2.9)
A 		1.9
(-3)
A 		30.2
(-2.2)
A 		41.6
(-1.9)
A 		99.1
(-0.4)
P 		225.5
(3)
P 		224
B 3.4
(-3)
A 		4.7
(-2.9)
A 		41.3
(-1.4)
A 		28.2
(-2)
A 		140
(2.6)
P 		148.9
(3)
P 		146
C 1
(-3)
A 		3.5
(-2.9)
A 		3.2
(-2.9)
A 		39.9
(-1.8)
A 		105.7
(0.3)
P 		189.2
(3)
P 		188
avr 2.8
(-3) 		3.4
(-3) 		24.9
(-2.3) 		36.6
(-1.9) 		114.9
(0.6) 		187.9
(3) 		185
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.5
(-2.9)
A 		3.5
(-0.7)
A 		1.4
(-3)
A 		6.8
(3)
A 		5
B 0.5
(-2.1)
A 		1.1
(3)
A 		0.4
(-3)
A 		1
(2.1)
A 		1
C 3.2
(-2.8)
A 		7.9
(3)
A 		3
(-3)
A 		4.8
(-0.8)
A 		5
avr 1.7
(-2.8) 		4.2
(3) 		1.6
(-3) 		4.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 0.7
(-3)
A 		0.7
(-3)
A 		6.6
(-2.3)
A 		10.5
(-1.9)
A 		29.9
(0.2)
P 		54.9
(3)
P 		54
B 1.2
(-3)
A 		1.6
(-3)
A 		10
(-2.1)
A 		7.5
(-2.3)
A 		56.9
(3)
P 		55.5
(2.8)
P 		56
C 0.4
(-3)
A 		1.1
(-2.9)
A 		0.8
(-3)
A 		8
(-2.3)
A 		34.2
(0.2)
P 		63.3
(3)
P 		63
avr 0.8
(-3) 		1.1
(-3) 		5.8
(-2.5) 		8.7
(-2.2) 		40.3
(1.2) 		57.9
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182518_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15895
Sequence Type Exemplar sequence
Representative Public ID C18G1.9 NCBI
Target Description C18G1.9 /REP_DB=WormBase Gene ID /WP=CE17425 /TR=O61923 /GB=AAC17761.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071881(11), NM_072091(11), NM_072044(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071881 NCBI Caenorhabditis elegans C18G1.9 (C18G1.9) mRNA, complete cds. 11/11 A 
NM_072091 NCBI Caenorhabditis elegans C14C11.1 (C14C11.1) mRNA, complete cds. 11/11 A 
NM_072044 NCBI Caenorhabditis elegans ZC317.6 (ZC317.6) mRNA, complete cds. 11/11 A 
SNAP00000018230 ENSEMBL cdna:SNAP chromosome:CEL140:V:4767735:4769509:-1 11/11 None
GENEFINDER00000018242 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4767735:4770231:-1 11/11 None
SNAP00000024124 ENSEMBL cdna:SNAP chromosome:CEL140:V:5666249:5667820:1 11/11 None
GENEFINDER00000024137 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5666249:5667820:1 11/11 None
SNAP00000026642 ENSEMBL cdna:SNAP chromosome:CEL140:V:5465670:5467436:-1 11/11 None
GENEFINDER00000026645 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5465670:5468364:-1 11/11 None
C18G1.9 ENSEMBL cdna:known chromosome:CEL140:V:4767835:4769509:-1 gene:C18G1.9 11/11 A 
ZC317.6 ENSEMBL cdna:known chromosome:CEL140:V:5465670:5466737:-1 gene:ZC317.6 11/11 A 
C14C11.1 ENSEMBL cdna:known chromosome:CEL140:V:5666249:5667820:1 gene:C14C11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4767834-4769509(-) 100.0 100.0
Public Domain and Genome References
Gene Title


Ensembl C18G1.9
ZC317.6
C14C11.1
Entrez Gene 182610 Entrez gene
182799 Entrez gene
191142 Entrez gene
SwissProt Q17980 EMBL-EBI
O61923 EMBL-EBI
Q23078 EMBL-EBI
WormBase CE06820 Wormbase
CE17425 Wormbase
CE38921 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96108 Hypothetical protein C14C11.1 [Caenorhabditis elegans] ref|NP_504492.1| C14C11.1 [Caenorhabditis elegans] 0.0
blast AAB04963 Hypothetical protein ZC317.6 [Caenorhabditis elegans] 0.0
blast AAB04963 Hypothetical protein ZC317.6 [Caenorhabditis elegans] 1.0E-179
blast AAA96108 Hypothetical protein C14C11.1 [Caenorhabditis elegans] ref|NP_504492.1| C14C11.1 [Caenorhabditis elegans] 1.0E-179
Sequence
Target Sequence 
>C. ELEGANS:182518_S_AT
aaaaggctatggcagctcgacgacgaggattcagtggaagtctaaaaaagaagcatcttg
aagagacaggggaaagtggttcagtcttccaatttttgaagaaaccacatcgagacacgt
tcactgtgccagaagctattcaagttcagcggcccgagatgcatgagattgactacccat
gctattctggagactttattagcaatctcgtgacagctatgtcgatggctgtaaacagtc
cgtatctctcgaaactcgatagattggcaattggagtgcttgctttcgaaagggccatgt
gttttatctacgatcgcccgacaaattcaataattcttctcgacactcatatgcatttta
aaggacaagctggaagtgttctctgtgttgcatcgtttgaagatattacggatttcatcg
tttcggtaactaagctcgtgttccatgaagttttcaaaactgcagatgtcaccggtcagt
tcgaaattacatgcctgatgcttacaagtctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGGCTATGGCAGCTCGACGACG 117 131 374 Antisense
CTCGACGACGAGGATTCAGTGGAAG 699 231 389 Antisense
GAAACCACATCGAGACACGTTCACT 60 359 474 Antisense
GACACGTTCACTGTGCCAGAAGCTA 286 367 487 Antisense
GCAATCTCGTGACAGCTATGTCGAT 343 321 575 Antisense
GGAGTGCTTGCTTTCGAAAGGGCCA 482 515 646 Antisense
CGAAAGGGCCATGTGTTTTATCTAC 222 225 660 Antisense
ATCTACGATCGCCCGACAAATTCAA 129 31 679 Antisense
TAATTCTTCTCGACACTCATATGCA 308 635 704 Antisense
TACGGATTTCATCGTTTCGGTAACT 39 649 780 Antisense
ACATGCCTGATGCTTACAAGTCTGA 148 107 862 Antisense
Sequence Source Affymetrix Proprietary Database