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[182517_at]

Description C18G1.9 /REP_DB=WormBase Gene ID /WP=CE17425 /TR=O61923 /GB=AAC17761.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 21      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 29.6
(-1.6)
A 		9.1
(-3)
A 		11.3
(-2.9)
A 		100
(3)
P 		91
B 48.1
(2.5)
A 		48
(2.4)
A 		4.5
(-3)
A 		52.4
(3)
A 		48
C 49.2
(3)
P 		27.5
(-0.7)
A 		13.9
(-3)
A 		43.7
(2.1)
A 		35
avr 42.3
(0.5) 		28.2
(-1) 		9.9
(-3) 		65.4
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 28.4
(-0.8)
A 		2.1
(-3)
A 		23.7
(-1.2)
A 		10.6
(-2.3)
A 		41.7
(0.3)
A 		74.1
(3)
P 		72
B 19.2
(-1.5)
A 		5.7
(-3)
A 		29.7
(-0.3)
M 		21.1
(-1.3)
A 		23
(-1.1)
A 		59.7
(3)
P 		54
C 9.1
(-3)
A 		68.2
(3)
P 		19.5
(-1.9)
A 		34.2
(-0.5)
A 		27.6
(-1.1)
A 		41.1
(0.2)
P 		59
avr 18.9
(-3) 		25.3
(-2) 		24.3
(-2.2) 		22
(-2.5) 		30.8
(-1.2) 		58.3
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 10.8
(1.2)
A 		2
(-3)
A 		3
(-2.5)
A 		14.6
(3)
P 		13
B 15.3
(3)
A 		11.9
(1.6)
A 		1
(-3)
A 		11.2
(1.3)
A 		14
C 16.3
(3)
P 		7.9
(-1.4)
A 		4.9
(-3)
A 		7.4
(-1.7)
A 		11
avr 14.1
(3) 		7.3
(-0.7) 		3
(-3) 		11.1
(1.4) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 5.2
(-1.4)
A 		0.7
(-3)
A 		5.2
(-1.4)
A 		2.7
(-2.3)
A 		12.6
(1.1)
A 		18
(3)
P 		17
B 6.7
(-1.6)
A 		1.9
(-3)
A 		7.2
(-1.4)
M 		5.6
(-1.9)
A 		9.3
(-0.8)
A 		22.3
(3)
P 		20
C 3.4
(-3)
A 		20.8
(3)
P 		5
(-2.4)
A 		6.9
(-1.8)
A 		8.9
(-1.1)
A 		13.8
(0.6)
P 		17
avr 5.1
(-3) 		7.8
(-1.7) 		5.8
(-2.7) 		5.1
(-3) 		10.3
(-0.6) 		18
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182517_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15895
Sequence Type Exemplar sequence
Representative Public ID C18G1.9 NCBI
Target Description C18G1.9 /REP_DB=WormBase Gene ID /WP=CE17425 /TR=O61923 /GB=AAC17761.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071881 NCBI Caenorhabditis elegans C18G1.9 (C18G1.9) mRNA, complete cds. 11/11 A 
SNAP00000018230 ENSEMBL cdna:SNAP chromosome:CEL140:V:4767735:4769509:-1 11/11 None
GENEFINDER00000018242 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4767735:4770231:-1 11/11 None
C18G1.9 ENSEMBL cdna:known chromosome:CEL140:V:4767835:4769509:-1 gene:C18G1.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4767834-4769509(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18G1.9
Entrez Gene 182799 Entrez gene
SwissProt O61923 EMBL-EBI
WormBase CE17425 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17761 Hypothetical protein C18G1.9 [Caenorhabditis elegans] ref|NP_504282.1| C18G1.9 [Caenorhabditis elegans] 1.0E-178
blast AAC17761 Hypothetical protein C18G1.9 [Caenorhabditis elegans] ref|NP_504282.1| C18G1.9 [Caenorhabditis elegans] 1.0E-177
blast AAA96108 Hypothetical protein C14C11.1 [Caenorhabditis elegans] ref|NP_504492.1| C14C11.1 [Caenorhabditis elegans] 1.0E-171
blast AAB04963 Hypothetical protein ZC317.6 [Caenorhabditis elegans] 1.0E-170
blast AAC17761 Hypothetical protein C18G1.9 [Caenorhabditis elegans] ref|NP_504282.1| C18G1.9 [Caenorhabditis elegans] 1.0E-170
blast AAA96108 Hypothetical protein C14C11.1 [Caenorhabditis elegans] ref|NP_504492.1| C14C11.1 [Caenorhabditis elegans] 1.0E-164
blast AAB04963 Hypothetical protein ZC317.6 [Caenorhabditis elegans] 1.0E-164
blast AAB04963 Hypothetical protein ZC317.6 [Caenorhabditis elegans] 1.0E-160
blast AAA96108 Hypothetical protein C14C11.1 [Caenorhabditis elegans] ref|NP_504492.1| C14C11.1 [Caenorhabditis elegans] 1.0E-160
Sequence
Target Sequence 
>C. ELEGANS:182517_AT
aagttcagcggcccgagatgcatgagattgactacccatgctattctggagactttatta
gcaatctcgtgacagctatgtcgatggctgtaaacagtccgtatctctcgaaactcgata
gattggcaattggagtgcttgctttcgaaagggccatgtgttttatctacgatcgcccga
caaattcaataattcttctcgacactcatatgcattttaaaggacaagctggaagtgttc
tctgtgttgcatcgtttgaagatattacggatttcatcgtttcggtaactaagctcgtgt
tccatgaagttttcaaaactgcagatgtcaccggtcagttcgaaattacatgcctgatgc
ttacaagtctgatgaacaaagtccacagaggagacatctttcttccagtcaaatcgagca
tgccaagagtcataccagtaaaacctttgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTCAGCGGCCCGAGATGCATGA 365 155 515 Antisense
CGGCCCGAGATGCATGAGATTGACT 379 241 523 Antisense
GAGATTGACTACCCATGCTATTCTG 224 397 538 Antisense
CTACCCATGCTATTCTGGAGACTTT 11 227 546 Antisense
GCTGTAAACAGTCCGTATCTCTCGA 596 295 601 Antisense
AGTCCGTATCTCTCGAAACTCGATA 291 61 610 Antisense
GTCCACAGAGGAGACATCTTTCTTC 485 477 895 Antisense
GAGGAGACATCTTTCTTCCAGTCAA 137 405 902 Antisense
TCTTCCAGTCAAATCGAGCATGCCA 7 619 915 Antisense
GAGCATGCCAAGAGTCATACCAGTA 390 389 930 Antisense
GAGTCATACCAGTAAAACCTTTGAG 202 399 941 Antisense
Sequence Source Affymetrix Proprietary Database