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[182516_at]

Description C50C10.3 /REP_DB=WormBase Gene ID /WP=CE05461 /TR=Q18730 /GB=CAA96609.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 11      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 55.2
(0)
A 		8.7
(-3)
A 		66.2
(0.8)
A 		100.3
(3)
A 		92
B 44
(-0.8)
A 		73.4
(3)
A 		27.4
(-2.9)
A 		26.8
(-3)
A 		47
C 18.7
(-2)
A 		47.3
(-0.1)
A 		3.9
(-3)
A 		95.1
(3)
A 		91
avr 39.3
(-2) 		43.1
(-1.5) 		32.5
(-3) 		74.1
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 10.3
(-3)
A 		36
(-0.2)
A 		63.4
(2.8)
A 		39.5
(0.2)
A 		43.8
(0.7)
A 		64.9
(3)
A 		55
B 34.6
(-2.8)
A 		51.7
(1.5)
A 		44.1
(-0.4)
A 		33.6
(-3)
A 		57.8
(3)
A 		34.1
(-2.9)
A 		24
C 53.7
(3)
A 		50.6
(2.6)
A 		2.3
(-3)
A 		14.7
(-1.6)
A 		24.1
(-0.5)
A 		14.3
(-1.6)
A 		51
avr 32.9
(-1.7) 		46.1
(3) 		36.6
(-0.4) 		29.3
(-3) 		41.9
(1.5) 		37.8
(0) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20.1
(3)
A 		1.9
(-3)
A 		17.3
(2.1)
A 		14.7
(1.2)
A 		18
B 14
(1)
A 		18.1
(3)
A 		6.3
(-2.7)
A 		5.7
(-3)
A 		12
C 6.2
(-1)
A 		13.6
(2)
A 		1.4
(-3)
A 		16
(3)
A 		15
avr 13.4
(3) 		11.2
(0.4) 		8.3
(-3) 		12.1
(1.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.9
(-3)
A 		12.8
(1.7)
A 		13.8
(2.1)
A 		10
(0.5)
A 		13.2
(1.9)
A 		15.8
(3)
A 		14
B 12
(-1.7)
A 		17.2
(0.4)
A 		10.7
(-2.3)
A 		8.9
(-3)
A 		23.5
(3)
A 		12.7
(-1.4)
A 		15
C 19.9
(3)
A 		15.4
(1.6)
A 		0.6
(-3)
A 		3
(-2.3)
A 		7.8
(-0.8)
A 		4.8
(-1.7)
A 		19
avr 11.3
(0.1) 		15.1
(3) 		8.4
(-2.2) 		7.3
(-3) 		14.8
(2.8) 		11.1
(-0.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182516_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11590
Sequence Type Exemplar sequence
Representative Public ID C50C10.3 NCBI
Target Description C50C10.3 /REP_DB=WormBase Gene ID /WP=CE05461 /TR=Q18730 /GB=CAA96609.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073132(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073132 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-30) (sru-30) mRNA, complete cds. 11/11 None
SNAP00000003330 ENSEMBL cdna:SNAP chromosome:CEL140:V:9816420:9817632:1 11/11 None
GENEFINDER00000003336 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9816420:9817589:1 11/11 None
C50C10.3 ENSEMBL cdna:known chromosome:CEL140:V:9816420:9817589:1 gene:C50C10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9816419-9817589(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-30
Ensembl C50C10.3
Entrez Gene 183646 Entrez gene
SwissProt Q18730 EMBL-EBI
WormBase CE05461 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96609 Hypothetical protein C50C10.3 [Caenorhabditis elegans] ref|NP_505533.1| Serpentine Receptor, class U family member (sru-30) [Caenorhabditis elegans] 1.0E-180
blast CAA96609 Hypothetical protein C50C10.3 [Caenorhabditis elegans] ref|NP_505533.1| Serpentine Receptor, class U family member (sru-30) [Caenorhabditis elegans] 1.0E-177
blast CAE72261 Hypothetical protein CBG19380 [Caenorhabditis briggsae] 1.0E-120
blast CAE72261 Hypothetical protein CBG19380 [Caenorhabditis briggsae] 1.0E-118
blast CAA96608 Hypothetical protein C50C10.2 [Caenorhabditis elegans] ref|NP_505532.1| Serpentine Receptor, class U family member (sru-29) [Caenorhabditis elegans] 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 4.7E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505533.1 7 26-48,68-90,113-135,157-179,205-227,251-273,288-310
C50C10.3 7 26-48,68-90,113-135,157-179,205-227,251-273,288-310
SNAP00000003330 7 26-48,68-90,113-135,157-179,205-227,251-273,288-310
GENEFINDER00000003336 7 26-48,68-90,113-135,157-179,205-227,251-273,288-310
Sequence
Target Sequence 
>C. ELEGANS:182516_AT
tctactaatgcgccgcttcgtttttccgtttatcataattgttccattttccctatcgct
tatcagtctaccggctactggttattgtaaacaactcggacccccattcaatttcggcgc
aattattgtcttcgaaagcgatttttttgccaagatcaatgtcatcgtgcacctttctct
ttcaaattttacgtttattggtcattattcattgtcagcatacatgtttttcaaaattcg
aaaaaccacttccaacacttcaaatcaaacaagaaaactcagcagaaaagctgaactctc
tttaacactgacaatggcttcttgtataattccttacatcacgaactctatagtttcgta
tacctttctatttgaccgtaataattggccacgagtcttattcctgcgagtcattggaaa
tgactatgaaacattaatgatgccatgggtactatttttcactcatccattatttcttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACTAATGCGCCGCTTCGTTTTT 326 613 465 Antisense
GCTTCGTTTTTCCGTTTATCATAAT 383 305 479 Antisense
ATCAGTCTACCGGCTACTGGTTATT 577 29 526 Antisense
AGATCAATGTCATCGTGCACCTTTC 246 67 617 Antisense
CCACTTCCAACACTTCAAATCAAAC 457 275 710 Antisense
AGCTGAACTCTCTTTAACACTGACA 548 81 753 Antisense
TAATTCCTTACATCACGAACTCTAT 122 635 791 Antisense
TTCGTATACCTTTCTATTTGACCGT 444 689 819 Antisense
ATAATTGGCCACGAGTCTTATTCCT 169 25 845 Antisense
TGCCATGGGTACTATTTTTCACTCA 226 583 905 Antisense
TTTTCACTCATCCATTATTTCTTCG 209 677 920 Antisense
Sequence Source Affymetrix Proprietary Database