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[182515_at]

Description F13B9.2 /REP_DB=WormBase Gene ID /WP=CE04379 /TR=Q19385 /GB=AAK39223.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 44.3
(-2.4)
A 		314.9
(3)
P 		210.9
(0.9)
P 		12.6
(-3)
A 		302
B 38
(-2.5)
A 		269.3
(1.9)
P 		324.9
(3)
P 		13.7
(-3)
A 		311
C 21.8
(-3)
A 		236.7
(1.8)
P 		288
(3)
P 		24.1
(-2.9)
A 		266
avr 34.7
(-2.6) 		273.6
(3) 		274.6
(3) 		16.8
(-3) 		258

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 172
(1)
P 		114.5
(-1.1)
P 		155.6
(0.4)
P 		224.8
(2.9)
P 		227.7
(3)
P 		62.6
(-3)
M 		165
B 87.2
(-1.9)
M 		192.1
(2.9)
P 		159.1
(1.4)
P 		187.1
(2.7)
P 		193.4
(3)
P 		64.2
(-3)
M 		129
C 115.3
(-1.6)
P 		213.6
(2.5)
P 		119.4
(-1.4)
P 		224.8
(3)
P 		168.5
(0.6)
P 		81.3
(-3)
P 		144
avr 124.8
(-0.7) 		173.4
(1.4) 		144.7
(0.2) 		212.2
(3) 		196.5
(2.3) 		69.4
(-3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 16.1
(-1.7)
A 		68.4
(3)
P 		55.1
(1.8)
P 		1.8
(-3)
A 		67
B 12.1
(-2.2)
A 		66.5
(2.3)
P 		75.3
(3)
P 		2.9
(-3)
A 		72
C 7.2
(-2.8)
A 		68.1
(1)
P 		100.4
(3)
P 		4.1
(-3)
A 		96
avr 11.8
(-2.3) 		67.7
(2.3) 		76.9
(3) 		2.9
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 31.7
(-1.1)
P 		40.7
(-0.1)
P 		33.9
(-0.9)
P 		57
(1.7)
P 		68.7
(3)
P 		15.2
(-3)
M 		54
B 30.3
(-2.3)
M 		64
(1.4)
P 		38.6
(-1.4)
P 		49.6
(-0.2)
P 		78.6
(3)
P 		23.9
(-3)
M 		55
C 42.8
(-0.5)
P 		65.2
(3)
P 		30.4
(-2.5)
P 		45.2
(-0.2)
P 		54.5
(1.3)
P 		27.2
(-3)
P 		38
avr 34.9
(-1.3) 		56.6
(1.6) 		34.3
(-1.4) 		50.6
(0.8) 		67.3
(3) 		22.1
(-3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182515_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16166
Sequence Type Exemplar sequence
Representative Public ID F13B9.2 NCBI
Target Description F13B9.2 /REP_DB=WormBase Gene ID /WP=CE04379 /TR=Q19385 /GB=AAK39223.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076997(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076997 NCBI Caenorhabditis elegans F13B9.2 (F13B9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000009674 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8285662:8293234:1 10/11 None
F13B9.2 ENSEMBL cdna:known chromosome:CEL140:X:8285620:8286715:1 gene:F13B9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8285660-8286714(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13B9.2
Entrez Gene 181083 Entrez gene
SwissProt Q19385 EMBL-EBI
WormBase CE04379 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ81277 Hypothetical protein F13B9.1c [Caenorhabditis elegans] ref|NP_001024557.1| F13B9.1c [Caenorhabditis elegans] 0.0
blast AAM54194 Hypothetical protein F13B9.1b [Caenorhabditis elegans] ref|NP_509399.2| F13B9.1b [Caenorhabditis elegans] 0.0
blast AAM54193 Hypothetical protein F13B9.1a [Caenorhabditis elegans] ref|NP_509400.3| F13B9.1a [Caenorhabditis elegans] 0.0
blast AAK39223 Hypothetical protein F13B9.2 [Caenorhabditis elegans] ref|NP_509398.1| F13B9.2 [Caenorhabditis elegans] 1.0E-101
blast CAE74870 Hypothetical protein CBG22729 [Caenorhabditis briggsae] 4.0E-58
Sequence
Target Sequence 
>C. ELEGANS:182515_AT
gaaaatttccattgctttaaagccttatcagtatcaatatgtcgacccaaattataatta
tccaaaagcgtctgaaacacctgtagcaagtccagaaaatgagattccagcgtttcgaac
ttttgagctcccaaaagaaccaaatgagccggagggatcaattaactttcgaacgcttaa
taatattgaaaatactgcaactattataccggcaagtgtaaaaccaataattccaaaaaa
aagaaaaacaaagcgaaaaccacgtcgaaaaccgaagaaaatgcatttacgccgtgtatt
caaaacgaggctaataactacgacgcctcgtcctgtttctataaatgaaattcgaataga
agaggaaaccatggaaacaacaacaaatgtgataaatctagcgccgattttcgacgccca
aaccggtacttcttacactgcagcggagcttaataggatatgttccgaaactgtgaatgt
gagcaaaggattcggaatatctgatattgaaagtttcgcaaaaaataattgttttttgat
tcgattgtattaccctgatgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATTTCCATTGCTTTAAAGCCT 510 353 84 Antisense
AAAAGCGTCTGAAACACCTGTAGCA 544 131 147 Antisense
AGCGTTTCGAACTTTTGAGCTCCCA 387 79 192 Antisense
GGGATCAATTAACTTTCGAACGCTT 88 495 237 Antisense
ACTGCAACTATTATACCGGCAAGTG 679 83 277 Antisense
GAAAATGCATTTACGCCGTGTATTC 466 353 360 Antisense
CTAATAACTACGACGCCTCGTCCTG 197 227 394 Antisense
GCCTCGTCCTGTTTCTATAAATGAA 182 283 408 Antisense
TAAATCTAGCGCCGATTTTCGACGC 553 641 476 Antisense
TACTTCTTACACTGCAGCGGAGCTT 522 645 510 Antisense
GATTCGATTGTATTACCCTGATGTA 10 433 621 Antisense
Sequence Source Affymetrix Proprietary Database