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[182514_at]

Description C42C1.8 /REP_DB=WormBase Gene ID /WP=CE16914 /TR=O44965 /GB=AAB97549.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 5.9
(-3)
A 		62.5
(2.7)
A 		65.8
(3)
A 		58.8
(2.3)
A 		60
B 9.2
(-3)
A 		60
(-0.9)
A 		61.1
(-0.8)
A 		154
(3)
P 		145
C 31
(-3)
A 		48.3
(-2.2)
A 		69
(-1.3)
A 		163.3
(3)
A 		132
avr 15.4
(-3) 		56.9
(-0.7) 		65.3
(-0.3) 		125.4
(3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 902
1 2 3 4 5 6 range
A 9.3
(-3)
A 		27.5
(-2.9)
A 		117.1
(-2.3)
A 		232.6
(-1.5)
P 		515.9
(0.4)
P 		908.4
(3)
P 		899
B 6.6
(-3)
A 		7.4
(-3)
A 		108.6
(-2.3)
A 		231.9
(-1.4)
P 		541.6
(0.7)
P 		875.3
(3)
P 		869
C 15.2
(-3)
A 		9.2
(-3)
A 		116.5
(-2.2)
A 		208
(-1.6)
P 		540.5
(0.7)
P 		864.4
(3)
P 		855
avr 10.4
(-3) 		14.7
(-3) 		114.1
(-2.3) 		224.2
(-1.5) 		532.7
(0.6) 		882.7
(3) 		872
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 2.1
(-3)
A 		13.6
(1.6)
A 		17.2
(3)
A 		8.6
(-0.4)
A 		15
B 2.9
(-3)
A 		14.8
(-0.6)
A 		14.1
(-0.8)
A 		32.8
(3)
P 		30
C 10.3
(-3)
A 		13.9
(-1.7)
A 		24.1
(1.8)
A 		27.5
(3)
A 		17
avr 5.1
(-3) 		14.1
(0) 		18.5
(1.5) 		23
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 1.7
(-3)
A 		9.8
(-2.8)
A 		25.5
(-2.3)
A 		59
(-1.4)
P 		155.7
(1.2)
P 		221.2
(3)
P 		220
B 2.3
(-3)
A 		2.5
(-3)
A 		26.4
(-2.6)
A 		61.4
(-1.9)
P 		220.1
(1)
P 		326.4
(3)
P 		324
C 5.6
(-2.9)
A 		2.8
(-3)
A 		29.7
(-2.4)
A 		41.8
(-2.2)
P 		174.9
(0.6)
P 		289.4
(3)
P 		287
avr 3.2
(-3) 		5
(-3) 		27.2
(-2.5) 		54.1
(-1.9) 		183.6
(0.9) 		279
(3) 		276
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182514_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8901
Sequence Type Exemplar sequence
Representative Public ID C42C1.8 NCBI
Target Description C42C1.8 /REP_DB=WormBase Gene ID /WP=CE16914 /TR=O44965 /GB=AAB97549.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069940(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069940 NCBI Caenorhabditis elegans C42C1.8 (C42C1.8) mRNA, complete cds. 11/11 None
SNAP00000027944 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12291023:12293103:1 11/11 None
GENEFINDER00000027950 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12291023:12293103:1 11/11 None
C42C1.8 ENSEMBL cdna:known chromosome:CEL140:IV:12291023:12293189:1 gene:C42C1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12291028-12293109(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C42C1.8
Entrez Gene 178179 Entrez gene
SwissProt O44965 EMBL-EBI
WormBase CE16914 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_502341 C42C1.8 [Caenorhabditis elegans] gb|AAB97549.1| Hypothetical protein C42C1.8 [Caenorhabditis elegans] 0.0
blast CAE69845 Hypothetical protein CBG16171 [Caenorhabditis briggsae] 5.0E-94
blast AAG38882 Hypothetical protein B0416.5a [Caenorhabditis elegans] ref|NP_509562.1| B0416.5a [Caenorhabditis elegans] sp|Q11073|YT45_CAEEL Hypothetical protein B0416.5 in chromosome X 5.0E-94
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502341.1 12 84-106,121-143,148-170,180-202,215-237,247-269,289-311,331-353,365-382,392-414,426-448,481-498
C42C1.8 12 84-106,121-143,148-170,180-202,215-237,247-269,289-311,331-353,365-382,392-414,426-448,481-498
SNAP00000027944 12 84-106,121-143,148-170,180-202,215-237,247-269,289-311,331-353,365-382,392-414,426-448,481-498
GENEFINDER00000027950 12 84-106,121-143,148-170,180-202,215-237,247-269,289-311,331-353,365-382,392-414,426-448,481-498
Sequence
Target Sequence 
>C. ELEGANS:182514_AT
tgcaaccgttgcgagtatctatgtcgataagcataaaaattaccgaacagctatgatcgt
actcatgaatttcgctgttatctttggagttggatttctctggatgtcaaaagttccaaa
tatgtcattgattctgtttttcatatcaggagccttcggattttgtggactggctgccta
ccctgttggattagagcttgctattgaatgtacatatccagccgctccagaagtttcctc
aggttttattgtgctcgttggacaactattcagtgtgctgattgttgcaattatcaaaat
cggcgcgaaaagcctaagttttgttgatagcgattttggagtggaggcatgtcgggcgca
tgcagaggacgccatcaatgttccaaagaattatgataatccaattattatcatcacatt
cattgctgttttaattgccatcgtggtttggttcttacgtgaggattaccgacgactaag
aagagagatgactaatgctccgaacagaacacgcacaacggtctctaccaccacaatcgt
tggtgccactacccaagaatcggatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAACCGTTGCGAGTATCTATGTC 127 577 1050 Antisense
GAATTTCGCTGTTATCTTTGGAGTT 635 325 1116 Antisense
TCGGATTTTGTGGACTGGCTGCCTA 200 607 1205 Antisense
GCTGCCTACCCTGTTGGATTAGAGC 327 295 1222 Antisense
ATTGAATGTACATATCCAGCCGCTC 328 3 1252 Antisense
GTTTCCTCAGGTTTTATTGTGCTCG 423 451 1282 Antisense
TTGGAGTGGAGGCATGTCGGGCGCA 477 705 1385 Antisense
GCAGAGGACGCCATCAATGTTCCAA 705 311 1411 Antisense
GCCATCGTGGTTTGGTTCTTACGTG 595 279 1486 Antisense
AACAGAACACGCACAACGGTCTCTA 426 133 1552 Antisense
GTGCCACTACCCAAGAATCGGATCC 652 477 1592 Antisense
Sequence Source Affymetrix Proprietary Database