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[182513_at]

Description F08F1.8 /REP_DB=WormBase Gene ID /WP=CE27929 /TR=O17389 /GB=AAB71308.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      6grp_highest_nonorm > 78      6grp_total > 95      4grp_total > 51      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 631
1 2 3 4 range
A 1144.4
(2.2)
P 		1195.1
(3)
A 		888.1
(-1.8)
M 		814.3
(-3)
A 		381
B 649.5
(-3)
P 		1215.3
(3)
M 		1064.6
(1.4)
A 		809.6
(-1.3)
A 		566
C 1177.6
(1.9)
P 		1280.2
(3)
M 		1071.7
(0.7)
P 		728.3
(-3)
A 		552
avr 990.5
(-0.2) 		1230.2
(3) 		1008.1
(0) 		784.1
(-3) 		446

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1614
1 2 3 4 5 6 range
A 1419.6
(-1.3)
P 		1087.2
(-3)
P 		1261
(-2.1)
P 		2237.8
(3)
P 		1723.6
(0.3)
P 		1867.7
(1.1)
P 		1151
B 1363
(-0.8)
P 		763.6
(-3)
P 		1112.4
(-1.7)
P 		1911.8
(1.3)
P 		2371.4
(3)
P 		1867
(1.1)
P 		1608
C 1230.3
(-1.2)
P 		757.2
(-3)
P 		927
(-2.4)
P 		1807.5
(0.9)
P 		2370.1
(3)
P 		2105.1
(2)
P 		1613
avr 1337.6
(-0.8) 		869.3
(-3) 		1100.1
(-1.9) 		1985.7
(2.2) 		2155
(3) 		1946.6
(2) 		1286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 416.7
(3)
P 		259.4
(-0.2)
A 		232.2
(-0.7)
M 		119.2
(-3)
A 		298
B 207.1
(-1.4)
P 		300.2
(3)
M 		246.7
(0.5)
A 		172.5
(-3)
A 		128
C 389.8
(3)
P 		368.1
(2.5)
M 		373.5
(2.6)
P 		122.8
(-3)
A 		267
avr 337.9
(3) 		309.2
(2.1) 		284.1
(1.4) 		138.2
(-3) 		200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 732
1 2 3 4 5 6 range
A 261.7
(-3)
P 		386.7
(-0.5)
P 		274.6
(-2.7)
P 		567.5
(3)
P 		520.1
(2.1)
P 		454.7
(0.8)
P 		306
B 474.3
(-1.1)
P 		254.2
(-3)
P 		270.1
(-2.9)
P 		506.4
(-0.9)
P 		963.5
(3)
P 		696.2
(0.7)
P 		709
C 456
(-0.5)
P 		231.1
(-3)
P 		235.9
(-2.9)
P 		363.5
(-1.5)
P 		766.9
(3)
P 		704.7
(2.3)
P 		536
avr 397.3
(-1.3) 		290.7
(-2.6) 		260.2
(-3) 		479.1
(-0.3) 		750.2
(3) 		618.5
(1.4) 		490
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182513_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16680
Sequence Type Exemplar sequence
Representative Public ID F08F1.8 NCBI
Target Description F08F1.8 /REP_DB=WormBase Gene ID /WP=CE27929 /TR=O17389 /GB=AAB71308.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077029(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077029 NCBI Caenorhabditis elegans Tetra THymosin (four thymosin repeat protein) family member (tth-1) (tth-1) mRNA, complete cds. 9/11 None
F08F1.8.3 ENSEMBL cdna:known chromosome:CEL140:X:8422416:8423670:-1 gene:F08F1.8 9/11 A 
F08F1.8.1 ENSEMBL cdna:known chromosome:CEL140:X:8422416:8423928:-1 gene:F08F1.8 9/11 A 
F08F1.8.2 ENSEMBL cdna:known chromosome:CEL140:X:8422416:8423668:-1 gene:F08F1.8 9/11 A 
F08F1.8.4 ENSEMBL cdna:known chromosome:CEL140:X:8422441:8423928:-1 gene:F08F1.8 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012389 8/11 Cross Hyb Matching Probes None
GENEFINDER00000012401 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8422801-8424429(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tth-1
Ensembl F08F1.8
Entrez Gene 181097 Entrez gene
SwissProt O17389 EMBL-EBI
WormBase CE27929 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7010 cytoskeleton organization and biogenesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3779 actin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71308 Tetra thymosin (four thymosin repeat protein) protein 1 [Caenorhabditis elegans] ref|NP_509430.1| Tetra THymosin (four thymosin repeat protein) family member (tth-1) [Caenorhabditis elegans] 1.0E-79
blast CAE74899 Hypothetical protein CBG22765 [Caenorhabditis briggsae] 6.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR001152 EMBL-EBI Thymosin beta-4 3.1E-6
Pfam IPR001152 EMBL-EBI Thymosin beta-4 1.1E-6
Sequence
Target Sequence 
>C. ELEGANS:182513_AT
attcttcatgtcattttgtcctcaaaatcctgtccattgcccaattttttcccgtccgtt
tgaaaataaaagcagcagcagcagacccagtgatgagtcagtcagtgcgacaagaaaaaa
aacactttcctccaaaactcgcaatggctgccgtcaccgaacttccaaagatgaaccaag
agctcgctggagctgtccgagagggattggagctcaaaaaagttgaaaccaccgagaaga
atgttttgccgaccaaggaagatgtcgccgaggagaagcaacatgtcgagcgcattcacg
agattgaacatttcgactctaccaagctccactctaccccagtgaaggagaagattgtgc
ttccatcggctgacgatatcaagcaggagaagcaacacttggagctcaccgacaagatca
acaactttccatctgagaacttgaaaaaaacagagaccattgagaagaacgtccttcctt
ctccaaccgatgttgctcgcgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTTCATGTCATTTTGTCCTCAA 551 11 125 Antisense
GCAGCAGACCCAGTGATGAGTCAGT 577 313 202 Antisense
CACTTTCCTCCAAAACTCGCAATGG 686 195 247 Antisense
GCTCGCTGGAGCTGTCCGAGAGGGA 214 299 306 Antisense
GAAGCAACATGTCGAGCGCATTCAC 135 341 399 Antisense
TGAACATTTCGACTCTACCAAGCTC 684 573 429 Antisense
CTCCACTCTACCCCAGTGAAGGAGA 418 235 451 Antisense
GTGCTTCCATCGGCTGACGATATCA 184 479 481 Antisense
GATCAACAACTTTCCATCTGAGAAC 498 421 540 Antisense
GAGAAGAACGTCCTTCCTTCTCCAA 220 391 586 Antisense
CTCCAACCGATGTTGCTCGCGAGAA 52 237 605 Antisense
Sequence Source Affymetrix Proprietary Database