[Home] | [Total List]

[182512_s_at] 7TM chemoreceptor, srx family /// 7TM chemoreceptor, srx family

Description R05D8.4 /REP_DB=WormBase Gene ID /WP=CE23896 /TR=Q9N5G7 /GB=AAF39948.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 13      6grp_cgc > 92      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 32.3
(-0.2)
P 		2.1
(-2.9)
A 		1.5
(-3)
A 		67
(3)
A 		66
B 13.2
(-1.1)
A 		14.8
(-0.8)
A 		2.1
(-3)
A 		37.4
(3)
A 		35
C 16.5
(-0.3)
A 		2.3
(-3)
A 		6.3
(-2.2)
A 		33.7
(3)
A 		31
avr 20.7
(-0.6) 		6.4
(-2.6) 		3.3
(-3) 		46
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 1.7
(-3)
A 		2.6
(-2.8)
A 		31.1
(3)
P 		11.3
(-1)
A 		10
(-1.3)
A 		19.7
(0.7)
A 		29
B 11.1
(0)
A 		18.9
(2.4)
A 		1
(-3)
A 		3.1
(-2.4)
A 		2.6
(-2.5)
A 		20.9
(3)
A 		20
C 17.1
(-0.7)
A 		25.6
(0.7)
A 		39.9
(3)
A 		23.9
(0.4)
A 		2.9
(-3)
A 		4.2
(-2.8)
A 		37
avr 10
(-1.5) 		15.7
(0.4) 		24
(3) 		12.8
(-0.6) 		5.2
(-3) 		14.9
(0.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.8
(3)
P 		0.4
(-3)
A 		0.4
(-3)
A 		9.8
(1.9)
A 		11
B 4.2
(-0)
A 		3.6
(-0.5)
A 		0.5
(-3)
A 		8
(3)
A 		8
C 5.5
(2.8)
A 		0.7
(-3)
A 		2.2
(-1.2)
A 		5.7
(3)
A 		5
avr 7.2
(2.5) 		1.6
(-2.5) 		1
(-3) 		7.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.9
(-2.4)
A 		6.8
(3)
P 		2.9
(-0.6)
A 		3
(-0.5)
A 		4.8
(1.2)
A 		7
B 3.9
(-0.1)
A 		6.3
(1.8)
A 		0.2
(-3)
A 		0.8
(-2.5)
A 		1.1
(-2.3)
A 		7.8
(3)
A 		8
C 6.3
(0.5)
A 		7.8
(1.5)
A 		10.1
(3)
A 		4.8
(-0.5)
A 		0.9
(-3)
A 		1.4
(-2.7)
A 		9
avr 3.5
(-0.3) 		5
(2) 		5.7
(3) 		2.8
(-1.4) 		1.7
(-3) 		4.7
(1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182512_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15922
Sequence Type Exemplar sequence
Representative Public ID R05D8.4 NCBI
Target Description R05D8.4 /REP_DB=WormBase Gene ID /WP=CE23896 /TR=Q9N5G7 /GB=AAF39948.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028499(10), NM_071346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028499 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-24) (srx-24) mRNA, complete cds. 10/11 None
NM_071346 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-26) (srx-26) mRNA, complete cds. 11/11 A 
GENEFINDER00000009147 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2751040:2754184:-1 11/11 None
SNAP00000038286 ENSEMBL cdna:SNAP chromosome:CEL140:V:2748303:2748962:-1 10/11 None
GENEFINDER00000038294 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2747979:2749163:-1 10/11 None
C24B9.16 ENSEMBL cdna:known chromosome:CEL140:V:2748066:2749933:-1 gene:C24B9.16 10/11 None
R05D8.4 ENSEMBL cdna:known chromosome:CEL140:V:2751040:2752934:-1 gene:R05D8.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038291 2/11 Cross Hyb Matching Probes None
C24B9.13 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2751039-2752934(-) 97.89 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
7TM chemoreceptor, srx family
Gene Symbol srx-24
srx-26
Ensembl C24B9.16
R05D8.4
Entrez Gene 187605 Entrez gene
3565787 Entrez gene
SwissProt O76442 EMBL-EBI
Q9N5G7 EMBL-EBI
WormBase CE36426 Wormbase
CE23896 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503747 Serpentine Receptor, class X family member (srx-26) [Caenorhabditis elegans] gb|AAF39948.1| Serpentine receptor, class x protein 26 [Caenorhabditis elegans] 0.0
blast NP_503747 Serpentine Receptor, class X family member (srx-26) [Caenorhabditis elegans] gb|AAF39948.1| Serpentine receptor, class x protein 26 [Caenorhabditis elegans] 1.0E-174
blast AAC19257 Serpentine receptor, class x protein 24 [Caenorhabditis elegans] ref|NP_001023670.1| Serpentine Receptor, class X family member (srx-24) [Caenorhabditis elegans] 1.0E-159
blast AAC19257 Serpentine receptor, class x protein 24 [Caenorhabditis elegans] ref|NP_001023670.1| Serpentine Receptor, class X family member (srx-24) [Caenorhabditis elegans] 1.0E-151
blast NP_503747 Serpentine Receptor, class X family member (srx-26) [Caenorhabditis elegans] gb|AAF39948.1| Serpentine receptor, class x protein 26 [Caenorhabditis elegans] 1.0E-134
blast AAC19257 Serpentine receptor, class x protein 24 [Caenorhabditis elegans] ref|NP_001023670.1| Serpentine Receptor, class X family member (srx-24) [Caenorhabditis elegans] 1.0E-130
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023670.1 7 5-27,46-68,95-117,124-143,173-192,224-246,261-283
NP_503747.1 7 6-28,40-62,77-99,120-142,167-189,224-246,256-278
C24B9.16 7 5-27,46-68,95-117,124-143,173-192,224-246,261-283
R05D8.4 7 6-28,40-62,77-99,120-142,167-189,224-246,256-278
GENEFINDER00000009147 8 13-35,92-114,177-199,209-231,291-310,336-358,393-415,425-447
SNAP00000038286 3 26-48,77-96,132-149
GENEFINDER00000038294 7 4-21,33-55,82-104,111-130,160-179,211-233,248-270
Sequence
Target Sequence 
>C. ELEGANS:182512_S_AT
atctaacttttgtgtggttggtatctatcatcggatgcaccgccatttatgaagttgcaa
actgtcatctagaatatgattccaatctctggaattttcaattcattgaaatctctaaat
tttgcgaagagatcacttggtattctgattttctcatcaacgcaatcattaccataatca
cattgaatcttgatctactggcagcctataaaggcaggaaactatcacgagctctacttt
gtgccgctggcctggaagtttctgaagctcaacgcaagagggaatggaatttcgtgaagc
agacgtgttttcaaggcttgtgcaactgtttagcagtactttcatactatatatttgccc
cgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTAACTTTTGTGTGGTTGGTATC 478 29 380 Antisense
GAAGTTGCAAACTGTCATCTAGAAT 255 337 430 Antisense
TGCGAAGAGATCACTTGGTATTCTG 623 577 502 Antisense
CACTTGGTATTCTGATTTTCTCATC 210 197 513 Antisense
GTATTCTGATTTTCTCATCAACGCA 399 453 519 Antisense
CTACTGGCAGCCTATAAAGGCAGGA 475 225 574 Antisense
AAGGCAGGAAACTATCACGAGCTCT 333 161 590 Antisense
CAGGAAACTATCACGAGCTCTACTT 394 209 594 Antisense
TCAACGCAAGAGGGAATGGAATTTC 281 1 648 Antisense
TGGAATTTCGTGAAGCAGACGTGTT 174 547 664 Antisense
TTCATACTATATATTTGCCCCGTTT 109 689 720 Antisense
Sequence Source Affymetrix Proprietary Database