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[182511_at] 7TM chemoreceptor, srx family

Description R05D8.4 /REP_DB=WormBase Gene ID /WP=CE23896 /TR=Q9N5G7 /GB=AAF39948.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 16      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 1.1
(-3)
A 		2.8
(-2.6)
A 		27.5
(2.7)
A 		29
(3)
A 		28
B 3.3
(-2.8)
A 		2.3
(-3)
A 		4
(-2.7)
A 		34.8
(3)
A 		33
C 9.6
(-3)
A 		24.6
(-0.7)
A 		16.2
(-2)
A 		48.3
(3)
P 		39
avr 4.7
(-3) 		9.9
(-2) 		15.9
(-0.9) 		37.4
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 22
(1)
A 		1.3
(-3)
A 		32
(3)
A 		4.6
(-2.4)
A 		13.6
(-0.6)
A 		4.2
(-2.4)
A 		31
B 0.6
(-3)
A 		2.5
(-2)
A 		4.4
(-1)
A 		10.4
(2.3)
A 		11.8
(3)
A 		11.6
(2.9)
A 		11
C 1.3
(-3)
A 		5.7
(-1.3)
A 		15.2
(2.3)
A 		17
(3)
A 		1.4
(-3)
A 		2.9
(-2.4)
A 		16
avr 8
(-0.9) 		3.2
(-3) 		17.2
(3) 		10.7
(0.2) 		8.9
(-0.6) 		6.2
(-1.7) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.4
(-3)
A 		0.6
(-2.8)
A 		7.2
(3)
A 		4.3
(0.4)
A 		7
B 1.1
(-2.6)
A 		0.6
(-3)
A 		0.9
(-2.7)
A 		7.4
(3)
A 		7
C 3.2
(-3)
A 		7.1
(1.7)
A 		5.7
(0)
A 		8.2
(3)
P 		5
avr 1.6
(-3) 		2.8
(-1.6) 		4.6
(0.6) 		6.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 4.1
(0.3)
A 		0.5
(-3)
A 		7
(3)
A 		1.2
(-2.4)
A 		4.1
(0.3)
A 		1
(-2.5)
A 		7
B 0.2
(-3)
A 		0.8
(-2.2)
A 		1.1
(-1.8)
A 		2.7
(0.3)
A 		4.8
(3)
A 		4.3
(2.3)
A 		5
C 0.5
(-3)
A 		1.7
(-0.9)
A 		3.9
(3)
A 		3.4
(2.1)
A 		0.5
(-3)
A 		1
(-2.1)
A 		3
avr 1.6
(-1.8) 		1
(-3) 		4
(3) 		2.4
(-0.2) 		3.1
(1.2) 		2.1
(-0.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182511_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15922
Sequence Type Exemplar sequence
Representative Public ID R05D8.4 NCBI
Target Description R05D8.4 /REP_DB=WormBase Gene ID /WP=CE23896 /TR=Q9N5G7 /GB=AAF39948.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071346 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-26) (srx-26) mRNA, complete cds. 11/11 A 
GENEFINDER00000009147 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2751040:2754184:-1 11/11 None
R05D8.4 ENSEMBL cdna:known chromosome:CEL140:V:2751040:2752934:-1 gene:R05D8.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2751039-2752934(-) 97.89 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-26
Ensembl R05D8.4
Entrez Gene 187605 Entrez gene
SwissProt Q9N5G7 EMBL-EBI
WormBase CE23896 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503747 Serpentine Receptor, class X family member (srx-26) [Caenorhabditis elegans] gb|AAF39948.1| Serpentine receptor, class x protein 26 [Caenorhabditis elegans] 0.0
blast NP_503747 Serpentine Receptor, class X family member (srx-26) [Caenorhabditis elegans] gb|AAF39948.1| Serpentine receptor, class x protein 26 [Caenorhabditis elegans] 1.0E-174
blast AAC19257 Serpentine receptor, class x protein 24 [Caenorhabditis elegans] ref|NP_001023670.1| Serpentine Receptor, class X family member (srx-24) [Caenorhabditis elegans] 1.0E-130
blast AAC19257 Serpentine receptor, class x protein 24 [Caenorhabditis elegans] ref|NP_001023670.1| Serpentine Receptor, class X family member (srx-24) [Caenorhabditis elegans] 1.0E-124
blast NP_503333 Serpentine Receptor, class X family member (srx-32) [Caenorhabditis elegans] gb|AAB69948.3| Serpentine receptor, class x protein 32 [Caenorhabditis elegans] 6.0E-75
blast NP_503333 Serpentine Receptor, class X family member (srx-32) [Caenorhabditis elegans] gb|AAB69948.3| Serpentine receptor, class x protein 32 [Caenorhabditis elegans] 2.0E-73
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503747.1 7 6-28,40-62,77-99,120-142,167-189,224-246,256-278
R05D8.4 7 6-28,40-62,77-99,120-142,167-189,224-246,256-278
GENEFINDER00000009147 8 13-35,92-114,177-199,209-231,291-310,336-358,393-415,425-447
Sequence
Target Sequence 
>C. ELEGANS:182511_AT
ttctcatcaacgcaatcattaccataatcacattgaatcttgatctactggcagcctata
aaggcaggaaactatcacgagctctactttgtgccgctggcctggaagtttctgaagctc
aacgcaagagggaatggaatttcgtgaagcagacgtgttttcaaggcttgtgcaactgtt
tagcagtactttcatactatatatttgccccgtttatccatgatgattggatcattttca
aatttttcttaactagtttgtggattttcatgcatacagttgatggagtgataatatttg
cctcaaactccgagttgagatcagtttttatgaaaagtgagattcgtctatcttctccat
tgataattgattcgaactttcagaaccaacaactatatcggccattaaagtatctcaggc
gtcacgcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCATCAACGCAATCATTACCAT 304 689 530 Antisense
CTGGCCTGGAAGTTTCTGAAGCTCA 557 241 626 Antisense
GCAGACGTGTTTTCAAGGCTTGTGC 110 313 678 Antisense
AAGGCTTGTGCAACTGTTTAGCAGT 1 161 692 Antisense
CTAGTTTGTGGATTTTCATGCATAC 399 225 782 Antisense
AATATTTGCCTCAAACTCCGAGTTG 628 173 822 Antisense
GTGAGATTCGTCTATCTTCTCCATT 696 483 866 Antisense
TCTTCTCCATTGATAATTGATTCGA 438 617 880 Antisense
GATTCGAACTTTCAGAACCAACAAC 253 431 898 Antisense
GAACCAACAACTATATCGGCCATTA 321 345 912 Antisense
TAAAGTATCTCAGGCGTCACGCGTT 536 641 935 Antisense
Sequence Source Affymetrix Proprietary Database